[med-svn] [lamarc] 02/02: Initial Debian packaging

Fri Dec 1 18:47:30 UTC 2017

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tille pushed a commit to branch master
in repository lamarc.

commit 987e3b9c1b9553ad084e42dc92b34a51fa6c19d7
Author: Andreas Tille <tille at debian.org>
Date:   Fri Dec 1 19:47:03 2017 +0100

    Initial Debian packaging
---
 debian/changelog         |  5 +++++
 debian/compat            |  1 +
 debian/control           | 28 ++++++++++++++++++++++++++++
 debian/copyright         | 34 ++++++++++++++++++++++++++++++++++
 debian/rules             | 22 ++++++++++++++++++++++
 debian/source/format     |  1 +
 debian/upstream/metadata | 12 ++++++++++++
 debian/watch             |  4 ++++
 8 files changed, 107 insertions(+)

diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..517b99f
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+lamarc (2.1.10+dfsg-1) UNRELEASED; urgency=medium
+
+  * Initial release (Closes: #<bug>)
+
+ -- Andreas Tille <tille at debian.org>  Fri, 01 Dec 2017 19:42:59 +0100
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..f599e28
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+10
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..5975208
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,28 @@
+Source: lamarc
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: science
+Priority: optional
+Build-Depends: debhelper (>= 10),
+               libboost-dev,
+               libtinyxml-dev,
+               libwxgtk3.0-dev
+Standards-Version: 4.1.1
+Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/lamarc.git
+Vcs-Git: https://anonscm.debian.org/git/debian-med/lamarc.git
+Homepage: http://evolution.gs.washington.edu/lamarc/
+
+Package: lamarc
+Architecture: any
+Depends: ${shlibs:Depends},
+         ${misc:Depends}
+Description: Likelihood Analysis with Metropolis Algorithm using Random Coalescence
+ LAMARC is a program which estimates population-genetic parameters such
+ as population size, population growth rate, recombination rate, and
+ migration rates. It approximates a summation over all possible
+ genealogies that could explain the observed sample, which may be
+ sequence, SNP, microsatellite, or electrophoretic data. LAMARC and its
+ sister program Migrate are successor programs to the older programs
+ Coalesce, Fluctuate, and Recombine, which are no longer being supported.
+ The programs are memory-intensive but can run effectively on
+ workstations; we support a variety of operating systems.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..58a81c1
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,34 @@
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: LAMARC
+Upstream-Contact: lamarc at u.washington.edu
+Source: http://evolution.gs.washington.edu/lamarc/lamarc_download.html
+Files-Excluded: */CVS
+                */boost
+                */tinyxml
+                */wxWidgets
+                */.#*
+
+Files: *
+Copyright: 2002-2005 Mary K. Kuhner, Peter Beerli, and Joseph Felsenstein
+License: Apache-2.0
+ Licensed under the Apache License, Version 2.0 (the "License");
+ you may not use this file except in compliance with the License.
+ You may obtain a copy of the License at
+ .
+    http://www.apache.org/licenses/LICENSE-2.0
+ .
+ Unless required by applicable law or agreed to in writing, software
+ distributed under the License is distributed on an "AS IS" BASIS,
+ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ See the License for the specific language governing permissions and
+ limitations under the License.
+Comment: Lots of files contain non-commercial license text
+ This software is distributed free of charge for non-commercial use
+ and is copyrighted.  Of course, we do not guarantee that the software
+ works, and are not responsible for any damage you may cause or have.
+ .
+ --> needs clarification
+
+Files: debian/*
+Copyright: 2017 Andreas Tille <tille at debian.org>
+License: BSD-3-clause
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..62983db
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,22 @@
+#!/usr/bin/make -f
+
+# DH_VERBOSE := 1
+export LC_ALL=C.UTF-8
+
+include /usr/share/dpkg/default.mk
+# this provides:
+# DEB_SOURCE: the source package name
+# DEB_VERSION: the full version of the package (epoch + upstream vers. + revision)
+# DEB_VERSION_EPOCH_UPSTREAM: the package's version without the Debian revision
+# DEB_VERSION_UPSTREAM_REVISION: the package's version without the Debian epoch
+# DEB_VERSION_UPSTREAM: the package's upstream version
+# DEB_DISTRIBUTION: the distribution(s) listed in the current entry of debian/changelog
+
+# for hardening you might like to uncomment this:
+# export DEB_BUILD_MAINT_OPTIONS=hardening=+all
+
+%:
+	dh $@
+
+#get-orig-source:
+#	. debian/get-orig-source
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/upstream/metadata b/debian/upstream/metadata
new file mode 100644
index 0000000..d8b5812
--- /dev/null
+++ b/debian/upstream/metadata
@@ -0,0 +1,12 @@
+Reference:
+  Author: 
+  Title: 
+  Journal: 
+  Year: 
+  Volume: 
+  Number: 
+  Pages: 
+  DOI: 
+  PMID:
+  URL: 
+  eprint: 
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..e5da309
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,4 @@
+version=4
+
+opts="repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,repack,compression=xz" \
+  http://evolution.gs.washington.edu/lamarc/ download/lamarc- at ANY_VERSION@-src\.tgz

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