[med-svn] [bitseq] 01/04: Provide more manpages

[Andreas Tille]

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tille pushed a commit to branch master
in repository bitseq.

commit f3ec1a9a0b52a8ff25e3504c3059cd2b1c4e8dcd
Author: Andreas Tille <tille at debian.org>
Date:   Sat Dec 2 12:36:50 2017 +0100

    Provide more manpages
---
 debian/control | 3 ++-
 debian/rules   | 9 ++++++++-
 2 files changed, 10 insertions(+), 2 deletions(-)

diff --git a/debian/control b/debian/control
index fa1b532..2dddf93 100644
--- a/debian/control
+++ b/debian/control
@@ -8,7 +8,8 @@ Build-Depends: debhelper (>= 10),
                zlib1g-dev,
                libbam-dev,
                libboost-dev,
-               help2man
+               help2man,
+               python
 Standards-Version: 4.1.1
 Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/bitseq.git
 Vcs-Git: https://anonscm.debian.org/git/debian-med/bitseq.git
diff --git a/debian/rules b/debian/rules
index 132aa77..dc74ae8 100755
--- a/debian/rules
+++ b/debian/rules
@@ -57,16 +57,23 @@ override_dh_installman:
 	help2man --no-info --name='helper for bitseq to transpose files lines and columns' \
 		--version-string="$(DEB_VERSION_UPSTREAM)" --no-discard-stderr \
 		$(bindir)/transposeLargeFile > $(mandir)/transposeLargeFile.1
+	help2man --no-info --name='extracts information about transcripts from reference Fasta file' \
+		--version-string="$(DEB_VERSION_UPSTREAM)" --no-discard-stderr \
+		$(debianmeddir)/extractTranscriptInfo.py > $(mandir)/extractTranscriptInfo.1
+	help2man --no-info --name='generate read counts for each input file' \
+		--version-string="$(DEB_VERSION_UPSTREAM)" --no-discard-stderr \
+		$(debianmeddir)/getCounts.py > $(mandir)/getCounts.1
 
 override_dh_auto_install:
 	find -maxdepth 1 -type f -perm /111 -exec dh_install '{}' /usr/bin ';'
 	# Provide scripts with extensions in Debian Med dir and without extension in /usr/bin
 	mkdir -p $(debianmeddir)
+	rm -f debian/$(DEB_SOURCE)/usr/bin/releaseDo.sh # internal BitSeq file, not intended for users
 	mv debian/$(DEB_SOURCE)/usr/bin/*.py debian/$(DEB_SOURCE)/usr/bin/*.sh $(debianmeddir)
 	    # parseAlignment.py suggests itself not to be used so do not expose this
 	for script in $(debianmeddir)/* ; do \
 	    bscript=`basename $${script}` ; \
-	    if [ "$${script}}" = "parseAlignment.py" ] ; then continue ; fi ; \
+	    if [ "$${bscript}" = "parseAlignment.py" ] ; then continue ; fi ; \
 	    ln -s  $(debianmedsysdir)/$${bscript} $(bindir)/`echo $${bscript} | sed -e 's/\.py$$//' -e 's/\.sh$$//'` ; \
 	done
 

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