[med-svn] [clonalorigin] 01/07: Take over information from tasks file into machine readable packaging files

[Andreas Tille]

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tille pushed a commit to branch master
in repository clonalorigin.

commit 243cac77c3c74798f571c627bbd00920f92e2454
Author: Andreas Tille <tille at debian.org>
Date:   Mon May 28 15:54:58 2012 +0000

    Take over information from tasks file into machine readable packaging files
---
 debian/changelog |  5 +++++
 debian/compat    |  1 +
 debian/control   | 26 ++++++++++++++++++++++++++
 debian/copyright | 11 +++++++++++
 debian/rules     |  6 ++++++
 debian/upstream  | 12 ++++++++++++
 6 files changed, 61 insertions(+)

diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..197c599
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+clonalorigin (0.0.20101011svn_r29-1) unstable; urgency=low
+
+  * Initial release
+
+ -- Andreas Tille <tille at debian.org>  Mon, 28 May 2012 17:47:37 +0200
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..8e093ec
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,26 @@
+Source: clonalorigin
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 9)
+Standards-Version: 3.9.3
+Homepage: http://code.google.com/p/clonalorigin/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/clonalorigin/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/clonalorigin/trunk/
+
+Package: clonalorigin
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: inference of homologous recombination in bacteria using whole genome sequences
+ Bacteria, unlike us, can reproduce on their own. They do however have
+ mechanisms that transfer DNA between organisms, a process more formally
+ known as recombination. The mechanisms by which recombination takes
+ place have been studied extensively in the laboratory but much remains
+ to be understood concerning how, when and where recombination takes
+ place within natural populations of bacteria and how it helps them to
+ adapt to new environments. ClonalOrigin performs a comparative analysis
+ of the sequences of a sample of bacterial genomes in order to
+ reconstruct the recombination events that have taken place in their
+ ancestry.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..33d6556
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,11 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Contact: Xavier Didelot <xavier.didelot at gmail.com>
+Source: http://code.google.com/p/clonalorigin/wiki/Download_And_Install_ClonalOrigin
+
+Files: *
+Copyright: © 2008-2010 Xavier Didelot, Aaron Darling, et. al.
+License: GPL-v3
+
+Files: debian/*
+Copyright: © 2012 Andreas Tille <tille at debian.org>
+License: GPL-v3
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..6055261
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,6 @@
+#!/usr/bin/make -f
+
+# DH_VERBOSE := 1
+
+%:
+	dh $@
diff --git a/debian/upstream b/debian/upstream
new file mode 100644
index 0000000..66aa8e8
--- /dev/null
+++ b/debian/upstream
@@ -0,0 +1,12 @@
+Reference:
+  Author: Xavier Didelot and Daniel Lawson and Aaron Darling and Daniel Falush
+  Title: Inference of Homologous Recombination in Bacteria Using Whole-Genome Sequences
+  Journal: Genetics
+  Year: 2010
+  Volume: 186
+  Number: 4
+  Pages: 1435-1449
+  DOI: 10.1534/genetics.110.120121
+  PMID: 20923983
+  URL: http://www.genetics.org/content/186/4/1435.abstract
+  eprint: http://www.genetics.org/content/186/4/1435.full.pdf+html

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