[med-svn] [clonalorigin] 06/07: Update upstream source from tag 'upstream/1.0'
Andreas Tille
tille at debian.org
Sat Dec 2 16:06:34 UTC 2017
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tille pushed a commit to branch master
in repository clonalorigin.
commit 15383a3619a8074b6fc1c91929cff4adb1ac0c3a
Merge: 01e4579 30e8f84
Author: Andreas Tille <tille at debian.org>
Date: Sat Dec 2 17:04:51 2017 +0100
Update upstream source from tag 'upstream/1.0'
Update to upstream version '1.0'
with Debian dir e1ab841c72492ad4b8e7b7b1be41f815fc3f2b4c
README.md | 28 +
gui/coloured.ui | 173 +
gui/colouredimpl.cpp | 100 +
gui/colouredimpl.h | 34 +
gui/densityontree.cpp | 89 +
gui/densityontree.h | 26 +
gui/gelmanrubin.ui | 218 +
gui/gelmanrubinimpl.cpp | 359 +
gui/gelmanrubinimpl.h | 70 +
gui/gui.cpp | 173 +
gui/gui.pro | 96 +
gui/heat.ui | 228 +
gui/heatimpl.cpp | 187 +
gui/heatimpl.h | 42 +
gui/mainapplicationdbusadaptor.h | 34 +
gui/mainwindow.ui | 944 +++
gui/mainwindowimpl.cpp | 952 +++
gui/mainwindowimpl.h | 128 +
gui/outputfile.cpp | 337 +
gui/outputfile.h | 88 +
gui/paramcons.cpp | 87 +
gui/paramcons.h | 30 +
gui/paramconsmult.cpp | 69 +
gui/paramconsmult.h | 30 +
gui/parammr.cpp | 212 +
gui/parammr.h | 32 +
gui/paramqt.cpp | 396 +
gui/paramqt.h | 149 +
gui/paramtreecons.cpp | 109 +
gui/paramtreecons.h | 22 +
gui/pd.ui | 222 +
gui/pdimpl.cpp | 172 +
gui/pdimpl.h | 41 +
gui/pheat.ui | 222 +
gui/pheatimpl.cpp | 164 +
gui/pheatimpl.h | 42 +
gui/plot.ui | 95 +
gui/plotimpl.cpp | 182 +
gui/plotimpl.h | 39 +
warg/AUTHORS | 3 +
warg/COPYING | 340 +
warg/ChangeLog | 1 +
warg/Makefile.am | 15 +
warg/NEWS | 2 +
warg/README | 13 +
warg/autogen.sh | 3 +
warg/configure.ac | 70 +
warg/data/Pestis_warg.nwk | 1 +
warg/data/Pestis_warg.xmfa | 1267 +++
warg/data/bac2.nwk | 1 +
warg/data/bac2.xmfa | 0
warg/data/data.xmfa | 23 +
warg/data/ecoli-names.txt | 74 +
warg/data/ecoli.nwk | 1 +
warg/data/ecoli_2outgroups.xmfa | 9263 ++++++++++++++++++++++
warg/data/ecoli_2outgroups1Sample100.nwk | 1 +
warg/data/ecoli_2outgroupsSample100.nwk | 1 +
warg/data/feil.nwk | 1 +
warg/data/feil.xmfa | 11837 +++++++++++++++++++++++++++++
warg/data/french.xmfa | 1608 ++++
warg/data/german.xmfa | 945 +++
warg/data/tree.nwk | 1 +
warg/m4/gsl.m4 | 162 +
warg/scripts/Makefile.am | 2 +
warg/scripts/blocksplit.pl | 24 +
warg/scripts/computeMedians.pl | 136 +
warg/scripts/convert.pl | 20 +
warg/scripts/genomeplots_log.R | 136 +
warg/scripts/getClonalTree | 13 +
warg/scripts/makeMauveWargFile.pl | 39 +
warg/scripts/rescale.pl | 20 +
warg/scripts/rhomulus.pl | 173 +
warg/src/Makefile.am | 16 +
warg/src/data.cpp | 232 +
warg/src/data.h | 133 +
warg/src/exponential.h | 35 +
warg/src/metropolis.cpp | 64 +
warg/src/metropolis.h | 32 +
warg/src/move.cpp | 18 +
warg/src/move.h | 70 +
warg/src/moveaddedge.cpp | 71 +
warg/src/moveaddedge.h | 27 +
warg/src/moveageclonal.cpp | 218 +
warg/src/moveageclonal.h | 52 +
warg/src/movedelta.cpp | 54 +
warg/src/movedelta.h | 25 +
warg/src/moveedgechange.cpp | 92 +
warg/src/moveedgechange.h | 27 +
warg/src/movegreedytree.cpp | 250 +
warg/src/movegreedytree.h | 57 +
warg/src/moveregraftclonal.cpp | 166 +
warg/src/moveregraftclonal.h | 38 +
warg/src/moveremedge.cpp | 59 +
warg/src/moveremedge.h | 27 +
warg/src/moverho.cpp | 30 +
warg/src/moverho.h | 25 +
warg/src/movescaletree.cpp | 103 +
warg/src/movescaletree.h | 29 +
warg/src/movesitechange.cpp | 196 +
warg/src/movesitechange.h | 30 +
warg/src/movetheta.cpp | 49 +
warg/src/movetheta.h | 28 +
warg/src/movetimechange.cpp | 140 +
warg/src/movetimechange.h | 27 +
warg/src/mpiutils.cpp | 143 +
warg/src/mpiutils.h | 70 +
warg/src/mydata.cpp | 192 +
warg/src/node.cpp | 153 +
warg/src/node.h | 82 +
warg/src/param.cpp | 617 ++
warg/src/param.h | 210 +
warg/src/profilerun.sh | 1 +
warg/src/recedge.cpp | 25 +
warg/src/recedge.h | 102 +
warg/src/rectree.cpp | 1425 ++++
warg/src/rectree.h | 178 +
warg/src/rng.cpp | 940 +++
warg/src/rng.h | 50 +
warg/src/slotallocator.h | 165 +
warg/src/tree.cpp | 481 ++
warg/src/tree.h | 84 +
warg/src/truth.xml | 130 +
warg/src/wargxml.cpp | 91 +
warg/src/wargxml.h | 50 +
warg/src/weakarg.cpp | 411 +
warg/src/weakarg.h | 68 +
warg/weakarg.pro | 52 +
127 files changed, 40957 insertions(+)
--
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