[med-svn] [python-mne] branch master updated (d69ff6c -> 41115b3)
Yaroslav Halchenko
debian at onerussian.com
Tue Dec 5 02:52:24 UTC 2017
This is an automated email from the git hooks/post-receive script.
yoh pushed a change to branch master
in repository python-mne.
from d69ff6c Depends: libjs-d3
new 89393dc New upstream version 0.15.2+dfsg
new b927c89 Update upstream source from tag 'upstream/0.15.2+dfsg'
new a1867c3 changelog
new f804e0c dropping CPed upstream patch
new 29bedb1 refreshed the patch adjusting for debian paths to js
new 6fb6238 adding pytest to build-depends
new 4f3f0d3 python-nibabel to B-Depends, and Recommends, patches to mitigate failing and segfaulting tests
new 41115b3 switch to py.test
The 8 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.gitignore | 4 +-
.mailmap | 26 +-
.travis.yml | 208 +-
MANIFEST.in | 60 +-
Makefile | 47 +-
README.rst | 22 +-
appveyor.yml | 13 +-
circle.yml | 110 +-
debian/changelog | 16 +
debian/control | 6 +
...t_b9958973c5e331aa488df1c514c8476d7f4c2830.diff | 61 -
debian/patches/deb_paths | 10 +-
debian/patches/deb_skip_segfaultingtests | 10 +
debian/patches/series | 4 +-
debian/patches/up_skip_test_requires_data | 10 +
debian/patches/up_tempita_unicode | 15 +
debian/rules | 4 +-
doc/Makefile | 17 +-
doc/_static/copybutton.js | 66 +
doc/_static/favicon.ico | Bin 6687 -> 7738 bytes
doc/_static/flag-icon.css | 23 +
doc/_static/font-awesome.css | 2337 +++++++++++++++++++
doc/_static/fontawesome-webfont.eot | Bin 0 -> 165742 bytes
doc/_static/fontawesome-webfont.ttf | Bin 0 -> 165548 bytes
doc/_static/fontawesome-webfont.woff | Bin 0 -> 98024 bytes
doc/_static/fontawesome-webfont.woff2 | Bin 0 -> 77160 bytes
doc/_static/fr.svg | 7 +
doc/_static/institutions.png | Bin 25284 -> 29945 bytes
doc/_static/mne_logo.png | Bin 39669 -> 38287 bytes
doc/_static/mne_logo_small.png | Bin 868 -> 980 bytes
doc/_static/style.css | 223 +-
doc/_static/us.svg | 18 +
doc/_templates/layout.html | 39 +-
doc/_templates/navbar.html | 20 +
doc/advanced_setup.rst | 163 ++
doc/carousel.inc | 87 +
doc/cite.rst | 17 -
doc/cited.rst | 303 ++-
doc/conf.py | 139 +-
doc/{contributing.rst => configure_git.rst} | 399 +---
doc/contributing.rst | 959 +-------
doc/customizing_git.rst | 4 +
doc/documentation.rst | 710 ++++++
doc/faq.rst | 79 +-
doc/getting_started.rst | 178 +-
doc/git_links.inc | 9 +-
doc/index.rst | 257 +--
doc/install_mne_c.rst | 70 +-
doc/install_mne_python.rst | 298 +--
doc/known_projects.inc | 6 +
doc/manual/appendix/c_release_notes.rst | 2 +-
doc/manual/channel_interpolation.rst | 6 +-
doc/manual/cookbook.rst | 51 +-
doc/manual/datasets_index.rst | 134 +-
doc/manual/decoding.rst | 101 +-
doc/manual/index.rst | 93 +-
doc/manual/io.rst | 72 +-
doc/manual/matlab.rst | 6 +-
doc/manual/memory.rst | 10 +-
doc/manual/migrating.rst | 58 +-
doc/manual/pitfalls.rst | 30 -
doc/manual/preprocessing/bads.rst | 2 +
doc/manual/preprocessing/filter.rst | 2 +
doc/manual/preprocessing/overview.rst | 8 +-
doc/manual/preprocessing/ssp.rst | 30 +-
doc/manual/sample_dataset.rst | 4 +-
doc/manual/statistics.rst | 10 +-
doc/manual/visualization.rst | 2 +
doc/martinos.rst | 10 +-
doc/mne_cpp.rst | 35 +-
doc/python_reference.rst | 544 ++---
doc/references.rst | 2 +-
doc/sphinxext/cited_mne.py | 23 +-
doc/sphinxext/gen_commands.py | 2 +
doc/tutorials.rst | 192 --
...{seven_stories_about_mne.rst => philosophy.rst} | 84 +-
doc/tutorials/report.rst | 30 +-
doc/whats_new.rst | 2351 +++++++++++++-------
environment.yml | 44 +
environment2.yml | 38 +
.../connectivity/plot_cwt_sensor_connectivity.py | 16 +-
.../plot_mixed_source_space_connectivity.py | 179 ++
.../plot_mne_inverse_coherence_epochs.py | 77 +-
.../plot_mne_inverse_connectivity_spectrum.py | 10 +-
.../plot_mne_inverse_label_connectivity.py | 53 +-
.../connectivity/plot_mne_inverse_psi_visual.py | 17 +-
examples/datasets/plot_brainstorm_data.py | 8 +-
examples/datasets/plot_hf_sef_data.py | 37 +
examples/datasets/plot_megsim_data_single_trial.py | 2 +-
examples/datasets/plot_spm_faces_dataset.py | 18 +-
examples/decoding/README.txt | 6 +-
examples/decoding/decoding_rsa.py | 185 ++
examples/decoding/plot_decoding_csp_eeg.py | 77 +-
examples/decoding/plot_decoding_csp_space.py | 26 +-
examples/decoding/plot_decoding_csp_timefreq.py | 163 ++
.../plot_decoding_spatio_temporal_source.py | 141 +-
examples/decoding/plot_decoding_spoc_CMC.py | 84 +
...plot_decoding_time_generalization_conditions.py | 78 +-
.../plot_decoding_unsupervised_spatial_filter.py | 4 +-
examples/decoding/plot_decoding_xdawn_eeg.py | 33 +-
examples/decoding/plot_ems_filtering.py | 36 +-
examples/decoding/plot_linear_model_patterns.py | 72 +-
examples/decoding/plot_receptive_field.py | 265 +++
examples/forward/plot_decimate_head_surface.py | 16 +-
examples/forward/plot_forward_sensitivity_maps.py | 5 +-
.../forward/plot_left_cerebellum_volume_source.py | 3 +-
examples/forward/plot_read_bem_surfaces.py | 39 -
examples/forward/plot_source_space_morphing.py | 1 -
.../plot_compute_mne_inverse_epochs_in_label.py | 1 -
.../plot_compute_mne_inverse_raw_in_label.py | 2 +-
examples/inverse/plot_covariance_whitening_dspm.py | 13 +-
examples/inverse/plot_custom_inverse_solver.py | 180 ++
examples/inverse/plot_dics_beamformer.py | 19 +-
examples/inverse/plot_dics_source_power.py | 21 +-
examples/inverse/plot_gamma_map_inverse.py | 63 +-
examples/inverse/plot_label_from_stc.py | 1 -
examples/inverse/plot_label_source_activations.py | 9 +-
examples/inverse/plot_lcmv_beamformer.py | 46 +-
examples/inverse/plot_lcmv_beamformer_volume.py | 33 +-
examples/inverse/plot_mixed_norm_inverse.py | 85 +-
.../inverse/plot_mixed_source_space_inverse.py | 148 ++
examples/inverse/plot_mne_point_spread_function.py | 3 +-
examples/inverse/plot_rap_music.py | 18 +-
examples/inverse/plot_read_source_space.py | 20 +-
examples/inverse/plot_tf_dics.py | 16 +-
examples/inverse/plot_tf_lcmv.py | 18 +-
.../plot_time_frequency_mixed_norm_inverse.py | 82 +-
examples/inverse/plot_vector_mne_solution.py | 41 +
examples/io/README.txt | 2 +-
examples/io/plot_elekta_epochs.py | 22 +-
examples/io/plot_objects_from_arrays.py | 50 +-
examples/io/plot_read_events.py | 77 +
examples/io/read_events.py | 31 -
examples/preprocessing/plot_head_positions.py | 31 +
.../preprocessing/plot_movement_compensation.py | 7 +-
examples/preprocessing/plot_rereference_eeg.py | 44 +-
examples/preprocessing/plot_resample.py | 4 +-
examples/preprocessing/plot_run_ica.py | 6 +-
examples/preprocessing/plot_virtual_evoked.py | 4 +-
examples/preprocessing/plot_xdawn_denoising.py | 13 +-
examples/realtime/ftclient_rt_average.py | 2 +-
examples/realtime/plot_compute_rt_decoder.py | 45 +-
examples/realtime/rt_feedback_server.py | 2 +-
examples/simulation/plot_simulate_evoked_data.py | 10 +-
examples/stats/plot_linear_regression_raw.py | 9 +-
examples/stats/plot_sensor_permutation_test.py | 10 +-
examples/stats/plot_sensor_regression.py | 15 +-
.../plot_compute_raw_data_spectrum.py | 54 +-
.../plot_source_label_time_frequency.py | 10 +-
.../plot_source_space_time_frequency.py | 2 +-
examples/time_frequency/plot_temporal_whitening.py | 6 +-
.../time_frequency/plot_time_frequency_erds.py | 118 +
.../plot_time_frequency_global_field_power.py | 128 ++
.../plot_time_frequency_simulated.py | 146 +-
examples/visualization/make_report.py | 33 +-
examples/visualization/plot_3d_to_2d.py | 121 +
.../visualization/plot_channel_epochs_image.py | 12 +-
examples/visualization/plot_clickable_image.py | 66 -
examples/visualization/plot_eeg_on_scalp.py | 25 +
examples/visualization/plot_evoked_topomap.py | 1 -
examples/visualization/plot_evoked_whitening.py | 10 +-
examples/visualization/plot_meg_sensors.py | 25 +-
examples/visualization/plot_parcellation.py | 47 +
examples/visualization/plot_roi_erpimage_by_rt.py | 72 +
examples/visualization/plot_sensor_noise_level.py | 30 +
.../plot_ssp_projs_sensitivity_map.py | 4 +-
.../visualization/plot_topo_compare_conditions.py | 19 +-
examples/visualization/plot_topo_customized.py | 3 +-
examples/visualization/plot_xhemi.py | 47 +
logo/generate_mne_logos.py | 22 +-
mne/__init__.py | 18 +-
mne/annotations.py | 123 +-
mne/baseline.py | 51 +-
mne/beamformer/__init__.py | 6 +-
mne/beamformer/_dics.py | 229 +-
mne/beamformer/_lcmv.py | 1029 ++++++---
mne/beamformer/_rap_music.py | 78 +-
mne/beamformer/tests/test_dics.py | 101 +-
mne/beamformer/tests/test_lcmv.py | 264 ++-
mne/beamformer/tests/test_rap_music.py | 101 +-
mne/bem.py | 379 ++--
mne/channels/__init__.py | 13 +-
mne/channels/channels.py | 511 ++++-
.../data/montages/10-5-System_Mastoids_EGI129.csd | 467 ----
.../{standard_alphabetic.elc => mgh60.elc} | 222 +-
.../montages/{standard_prefixed.elc => mgh70.elc} | 156 +-
mne/channels/data/neighbors/__init__.py | 2 +-
mne/channels/interpolation.py | 27 +-
mne/channels/layout.py | 132 +-
mne/channels/montage.py | 681 +++---
mne/channels/tests/test_channels.py | 99 +-
mne/channels/tests/test_interpolation.py | 25 +-
mne/channels/tests/test_layout.py | 1 +
mne/channels/tests/test_montage.py | 560 +++--
mne/chpi.py | 721 ++++--
mne/commands/__init__.py | 2 +
mne/commands/mne_browse_raw.py | 3 +-
mne/commands/mne_bti2fiff.py | 3 +-
mne/commands/mne_clean_eog_ecg.py | 9 +-
mne/commands/mne_compare_fiff.py | 3 +-
mne/commands/mne_compute_proj_ecg.py | 3 +-
mne/commands/mne_compute_proj_eog.py | 3 +-
mne/commands/mne_coreg.py | 42 +-
mne/commands/mne_flash_bem.py | 4 +-
mne/commands/mne_freeview_bem_surfaces.py | 8 +-
mne/commands/mne_kit2fiff.py | 7 +
mne/commands/mne_make_scalp_surfaces.py | 67 +-
mne/commands/mne_maxfilter.py | 3 +-
mne/commands/mne_report.py | 11 +-
mne/commands/mne_show_fiff.py | 19 +-
mne/commands/mne_show_info.py | 1 +
mne/commands/mne_surf2bem.py | 10 +-
mne/commands/mne_watershed_bem.py | 7 +-
mne/commands/tests/test_commands.py | 48 +-
mne/commands/utils.py | 49 +-
mne/connectivity/__init__.py | 3 +-
mne/connectivity/effective.py | 17 +-
mne/connectivity/spectral.py | 642 +++---
mne/connectivity/tests/test_effective.py | 2 +-
mne/connectivity/tests/test_spectral.py | 103 +-
mne/connectivity/utils.py | 3 +-
mne/coreg.py | 197 +-
mne/cov.py | 518 +++--
mne/cuda.py | 52 +-
mne/data/__init__.py | 1 +
mne/data/coil_def.dat | 78 +
.../fsaverage}/fsaverage-fiducials.fif | Bin
mne/data/fsaverage/fsaverage-head.fif | Bin 0 -> 97892 bytes
mne/data/fsaverage/fsaverage-inner_skull-bem.fif | Bin 0 -> 491944 bytes
mne/data/fsaverage/fsaverage-trans.fif | Bin 0 -> 212 bytes
mne/data/image/custom_layout.lout | 47 +-
mne/datasets/__init__.py | 10 +-
mne/datasets/_fake/__init__.py | 3 +-
mne/datasets/_fake/_fake.py | 4 +-
mne/datasets/brainstorm/__init__.py | 3 +-
mne/datasets/brainstorm/bst_auditory.py | 21 +-
mne/datasets/brainstorm/bst_phantom_ctf.py | 21 +-
mne/datasets/brainstorm/bst_phantom_elekta.py | 22 +-
mne/datasets/brainstorm/bst_raw.py | 22 +-
mne/datasets/brainstorm/bst_resting.py | 21 +-
mne/datasets/eegbci/__init__.py | 3 +-
mne/datasets/eegbci/eegbci.py | 96 +-
mne/datasets/fieldtrip_cmc/__init__.py | 3 +
mne/datasets/fieldtrip_cmc/fieldtrip_cmc.py | 32 +
mne/datasets/hf_sef/__init__.py | 3 +
mne/datasets/hf_sef/hf_sef.py | 99 +
mne/datasets/megsim/__init__.py | 3 +-
mne/datasets/megsim/megsim.py | 55 +-
mne/datasets/megsim/urls.py | 6 +-
mne/datasets/misc/__init__.py | 3 +-
mne/datasets/misc/_misc.py | 2 +-
mne/datasets/mtrf/__init__.py | 3 +
mne/datasets/mtrf/mtrf.py | 30 +
mne/datasets/multimodal/__init__.py | 3 +-
mne/datasets/multimodal/multimodal.py | 4 +-
mne/datasets/sample/__init__.py | 3 +-
mne/datasets/sample/sample.py | 4 +-
mne/datasets/somato/__init__.py | 3 +-
mne/datasets/somato/somato.py | 4 +-
mne/datasets/spm_face/__init__.py | 3 +-
mne/datasets/spm_face/spm_data.py | 4 +-
mne/datasets/testing/__init__.py | 3 +-
mne/datasets/testing/_testing.py | 4 +-
mne/datasets/tests/test_datasets.py | 12 +-
mne/datasets/utils.py | 595 +++--
mne/datasets/visual_92_categories/__init__.py | 5 +
.../visual_92_categories/visual_92_categories.py | 78 +
mne/decoding/__init__.py | 11 +-
mne/decoding/base.py | 914 +++-----
mne/decoding/csp.py | 362 ++-
mne/decoding/ems.py | 60 +-
mne/decoding/mixin.py | 5 +-
mne/decoding/receptive_field.py | 486 ++++
mne/decoding/search_light.py | 377 ++--
mne/decoding/tests/test_base.py | 230 ++
mne/decoding/tests/test_csp.py | 149 +-
mne/decoding/tests/test_ems.py | 19 +-
mne/decoding/tests/test_receptive_field.py | 528 +++++
mne/decoding/tests/test_search_light.py | 145 +-
mne/decoding/tests/test_time_frequency.py | 10 +-
mne/decoding/tests/test_time_gen.py | 88 +-
mne/decoding/tests/test_transformer.py | 134 +-
mne/decoding/time_delaying_ridge.py | 343 +++
mne/decoding/time_frequency.py | 48 +-
mne/decoding/time_gen.py | 100 +-
mne/decoding/transformer.py | 509 ++---
mne/defaults.py | 22 +-
mne/dipole.py | 595 +++--
mne/epochs.py | 631 +++---
mne/event.py | 201 +-
mne/evoked.py | 300 ++-
mne/externals/FieldTrip.py | 2 +-
mne/externals/__init__.py | 7 +-
mne/externals/funcsigs.py | 815 +++++++
mne/externals/tempita/__init__.py | 1305 ++++++++++-
mne/externals/tempita/_looper.py | 4 +-
mne/externals/tempita/_tempita.py | 1182 ----------
mne/externals/tempita/compat3.py | 20 +-
mne/filter.py | 1467 ++++++------
mne/fixes.py | 794 ++++++-
mne/forward/__init__.py | 5 +-
mne/forward/_compute_forward.py | 60 +-
mne/forward/_field_interpolation.py | 52 +-
mne/forward/_lead_dots.py | 56 +-
mne/forward/_make_forward.py | 242 +-
mne/forward/forward.py | 493 ++--
mne/forward/tests/test_field_interpolation.py | 53 +-
mne/forward/tests/test_forward.py | 138 +-
mne/forward/tests/test_make_forward.py | 66 +-
mne/gui/__init__.py | 102 +-
mne/gui/_backend.py | 9 +-
mne/gui/_coreg_gui.py | 885 +++++---
mne/gui/_fiducials_gui.py | 116 +-
mne/gui/_file_traits.py | 365 +--
mne/gui/_help.py | 2 +-
mne/gui/_kit2fiff_gui.py | 195 +-
mne/gui/_marker_gui.py | 81 +-
mne/gui/_viewer.py | 231 +-
mne/gui/tests/test_coreg_gui.py | 146 +-
mne/gui/tests/test_fiducials_gui.py | 9 +-
mne/gui/tests/test_file_traits.py | 42 +-
mne/gui/tests/test_kit2fiff_gui.py | 59 +-
mne/gui/tests/test_marker_gui.py | 13 +-
mne/inverse_sparse/__init__.py | 5 +-
mne/inverse_sparse/_gamma_map.py | 94 +-
mne/inverse_sparse/mxne_debiasing.py | 7 +-
mne/inverse_sparse/mxne_inverse.py | 313 ++-
mne/inverse_sparse/mxne_optim.py | 649 +++---
mne/inverse_sparse/tests/test_gamma_map.py | 94 +-
mne/inverse_sparse/tests/test_mxne_inverse.py | 118 +-
mne/inverse_sparse/tests/test_mxne_optim.py | 19 +-
mne/io/__init__.py | 11 +-
mne/io/array/__init__.py | 2 +-
mne/io/array/array.py | 33 +-
mne/io/array/tests/test_array.py | 63 +-
mne/io/artemis123/__init__.py | 7 +
mne/io/artemis123/artemis123.py | 440 ++++
.../artemis123/resources/Artemis123_ChannelMap.csv | 146 ++
mne/io/artemis123/resources/Artemis123_mneLoc.csv | 144 ++
.../artemis123}/tests/__init__.py | 0
mne/io/artemis123/tests/test_artemis123.py | 100 +
mne/io/artemis123/utils.py | 138 ++
mne/io/base.py | 771 ++++---
mne/io/brainvision/__init__.py | 2 +-
mne/io/brainvision/brainvision.py | 254 ++-
mne/io/brainvision/tests/test_brainvision.py | 335 ++-
mne/io/bti/__init__.py | 2 +-
mne/io/bti/bti.py | 226 +-
mne/io/bti/read.py | 44 +-
mne/io/bti/tests/test_bti.py | 18 +-
mne/io/cnt/__init__.py | 2 +
mne/io/cnt/cnt.py | 93 +-
mne/io/compensator.py | 11 +-
mne/io/constants.py | 52 +-
mne/io/ctf/__init__.py | 2 +-
mne/io/ctf/constants.py | 2 +-
mne/io/ctf/ctf.py | 38 +-
mne/io/ctf/eeg.py | 8 +-
mne/io/ctf/hc.py | 7 +-
mne/io/ctf/info.py | 58 +-
mne/io/ctf/res4.py | 25 +-
mne/io/ctf/tests/test_ctf.py | 32 +-
mne/io/ctf/trans.py | 20 +-
mne/io/ctf_comp.py | 11 +-
mne/io/diff.py | 5 +-
mne/io/edf/__init__.py | 4 +-
mne/io/edf/edf.py | 1067 +++++++--
mne/io/edf/tests/test_edf.py | 64 +-
mne/io/edf/tests/test_gdf.py | 92 +
mne/io/eeglab/__init__.py | 4 +-
mne/io/eeglab/eeglab.py | 171 +-
mne/io/eeglab/tests/test_eeglab.py | 115 +-
mne/io/egi/__init__.py | 4 +-
mne/io/egi/egi.py | 98 +-
mne/io/egi/egimff.py | 576 +++++
mne/io/egi/events.py | 165 ++
mne/io/egi/general.py | 162 ++
mne/io/egi/tests/test_egi.py | 87 +-
mne/io/fiff/__init__.py | 2 +
mne/io/fiff/raw.py | 168 +-
mne/io/fiff/tests/test_raw_fiff.py | 350 ++-
mne/io/kit/__init__.py | 2 +-
mne/io/kit/constants.py | 267 ++-
mne/io/kit/coreg.py | 8 +-
mne/io/kit/kit.py | 566 ++---
mne/io/kit/tests/test_kit.py | 95 +-
mne/io/matrix.py | 9 +-
mne/io/meas_info.py | 652 ++++--
mne/io/nicolet/__init__.py | 2 +-
mne/io/nicolet/nicolet.py | 22 +-
mne/io/open.py | 46 +-
mne/io/pick.py | 119 +-
mne/io/proc_history.py | 139 +-
mne/io/proj.py | 220 +-
mne/io/reference.py | 350 ++-
mne/io/tag.py | 63 +-
mne/io/tests/test_apply_function.py | 25 +-
mne/io/tests/test_compensator.py | 11 +-
mne/io/tests/test_meas_info.py | 55 +-
mne/io/tests/test_pick.py | 23 +-
mne/io/tests/test_proc_history.py | 9 +-
mne/io/tests/test_raw.py | 14 +-
mne/io/tests/test_reference.py | 192 +-
mne/io/tree.py | 8 +-
mne/io/utils.py | 15 +-
mne/io/write.py | 96 +-
mne/label.py | 190 +-
mne/minimum_norm/__init__.py | 2 +-
mne/minimum_norm/inverse.py | 454 ++--
mne/minimum_norm/psf_ctf.py | 34 +-
mne/minimum_norm/tests/test_inverse.py | 319 ++-
mne/minimum_norm/tests/test_psf_ctf.py | 11 +-
mne/minimum_norm/tests/test_time_frequency.py | 61 +-
mne/minimum_norm/time_frequency.py | 133 +-
mne/misc.py | 8 +-
mne/parallel.py | 32 +-
mne/preprocessing/__init__.py | 3 +-
mne/preprocessing/_fine_cal.py | 6 +-
mne/preprocessing/bads.py | 2 +-
mne/preprocessing/ctps_.py | 10 +-
mne/preprocessing/ecg.py | 55 +-
mne/preprocessing/eog.py | 80 +-
mne/preprocessing/ica.py | 479 ++--
mne/preprocessing/infomax_.py | 29 +-
mne/preprocessing/maxfilter.py | 36 +-
mne/preprocessing/maxwell.py | 551 ++---
mne/preprocessing/peak_finder.py | 6 +-
mne/preprocessing/ssp.py | 93 +-
mne/preprocessing/stim.py | 42 +-
mne/preprocessing/tests/test_ecg.py | 9 +-
mne/preprocessing/tests/test_eeglab_infomax.py | 21 +-
mne/preprocessing/tests/test_eog.py | 11 +-
mne/preprocessing/tests/test_ica.py | 226 +-
mne/preprocessing/tests/test_maxwell.py | 196 +-
mne/preprocessing/tests/test_ssp.py | 28 +-
mne/preprocessing/tests/test_stim.py | 9 +-
mne/preprocessing/tests/test_xdawn.py | 28 +-
mne/preprocessing/xdawn.py | 120 +-
mne/proj.py | 29 +-
mne/realtime/__init__.py | 2 +-
mne/realtime/client.py | 49 +-
mne/realtime/epochs.py | 75 +-
mne/realtime/fieldtrip_client.py | 52 +-
mne/realtime/mockclient.py | 21 +-
mne/realtime/stim_server_client.py | 58 +-
mne/realtime/tests/test_mockclient.py | 69 +-
mne/report.py | 429 ++--
mne/selection.py | 20 +-
mne/simulation/__init__.py | 3 +-
mne/simulation/evoked.py | 93 +-
mne/simulation/metrics.py | 6 +-
mne/simulation/raw.py | 288 ++-
mne/simulation/source.py | 6 +-
mne/simulation/tests/test_evoked.py | 58 +-
mne/simulation/tests/test_metrics.py | 2 +-
mne/simulation/tests/test_raw.py | 186 +-
mne/simulation/tests/test_source.py | 14 +-
mne/source_estimate.py | 1527 ++++++++-----
mne/source_space.py | 709 +++---
mne/stats/__init__.py | 7 +-
mne/stats/cluster_level.py | 448 ++--
mne/stats/multi_comp.py | 7 +-
mne/stats/parametric.py | 30 +-
mne/stats/permutations.py | 49 +-
mne/stats/regression.py | 71 +-
mne/stats/tests/test_cluster_level.py | 198 +-
mne/stats/tests/test_permutations.py | 25 +-
mne/stats/tests/test_regression.py | 35 +-
mne/surface.py | 620 +++---
mne/tests/common.py | 11 +-
mne/tests/test_annotations.py | 162 +-
mne/tests/test_bem.py | 8 +-
mne/tests/test_chpi.py | 289 ++-
mne/tests/test_coreg.py | 51 +-
mne/tests/test_cov.py | 208 +-
mne/tests/test_dipole.py | 123 +-
mne/tests/test_docstring_parameters.py | 201 +-
mne/tests/test_epochs.py | 624 +++---
mne/tests/test_event.py | 35 +-
mne/tests/test_evoked.py | 34 +-
mne/tests/test_filter.py | 263 ++-
mne/tests/test_fixes.py | 19 +-
mne/tests/test_import_nesting.py | 4 +-
mne/tests/test_label.py | 73 +-
mne/tests/test_line_endings.py | 6 +-
mne/tests/test_proj.py | 81 +-
mne/tests/test_report.py | 42 +-
mne/tests/test_selection.py | 6 +-
mne/tests/test_source_estimate.py | 469 ++--
mne/tests/test_source_space.py | 180 +-
mne/tests/test_surface.py | 41 +-
mne/tests/test_transforms.py | 191 +-
mne/tests/test_utils.py | 148 +-
mne/time_frequency/__init__.py | 18 +-
mne/time_frequency/_stockwell.py | 84 +-
mne/time_frequency/ar.py | 156 +-
mne/time_frequency/csd.py | 84 +-
mne/time_frequency/multitaper.py | 172 +-
mne/time_frequency/psd.py | 179 +-
mne/time_frequency/stft.py | 12 +-
mne/time_frequency/tests/test_ar.py | 46 +-
mne/time_frequency/tests/test_csd.py | 24 +-
mne/time_frequency/tests/test_multitaper.py | 52 +-
mne/time_frequency/tests/test_psd.py | 69 +-
mne/time_frequency/tests/test_stockwell.py | 11 +-
mne/time_frequency/tests/test_tfr.py | 153 +-
mne/time_frequency/tfr.py | 723 +++---
mne/transforms.py | 701 +++++-
mne/utils.py | 693 +++---
mne/viz/_3d.py | 2237 ++++++++++++++++---
mne/viz/__init__.py | 10 +-
mne/viz/circle.py | 14 +-
mne/viz/decoding.py | 22 +-
mne/viz/epochs.py | 778 +++++--
mne/viz/evoked.py | 1229 +++++-----
mne/viz/ica.py | 158 +-
mne/viz/misc.py | 371 ++-
mne/viz/montage.py | 86 +-
mne/viz/raw.py | 578 +++--
mne/viz/tests/__init__py | 0
mne/viz/tests/test_3d.py | 297 ++-
mne/viz/tests/test_decoding.py | 110 +-
mne/viz/tests/test_epochs.py | 87 +-
mne/viz/tests/test_evoked.py | 85 +-
mne/viz/tests/test_ica.py | 61 +-
mne/viz/tests/test_misc.py | 37 +-
mne/viz/tests/test_montage.py | 42 +-
mne/viz/tests/test_raw.py | 212 +-
mne/viz/tests/test_topo.py | 106 +-
mne/viz/tests/test_topomap.py | 156 +-
mne/viz/tests/test_utils.py | 50 +-
mne/viz/topo.py | 334 ++-
mne/viz/topomap.py | 804 ++++---
mne/viz/utils.py | 955 ++++++--
setup.cfg | 29 +-
setup.py | 67 +-
tutorials/plot_artifacts_correction_filtering.py | 31 +-
tutorials/plot_artifacts_correction_ica.py | 66 +-
.../plot_artifacts_correction_maxwell_filtering.py | 5 +-
tutorials/plot_artifacts_correction_rejection.py | 10 +-
tutorials/plot_artifacts_correction_ssp.py | 20 +-
tutorials/plot_artifacts_detection.py | 3 +-
tutorials/plot_background_filtering.py | 334 +--
tutorials/plot_brainstorm_auditory.py | 37 +-
tutorials/plot_brainstorm_phantom_ctf.py | 13 +-
tutorials/plot_brainstorm_phantom_elekta.py | 81 +-
tutorials/plot_compute_covariance.py | 79 +-
tutorials/plot_configuration.py | 87 +
tutorials/plot_creating_data_structures.py | 55 +-
tutorials/plot_dipole_fit.py | 11 +-
tutorials/plot_dipole_orientations.py | 206 ++
tutorials/plot_ecog.py | 76 +
tutorials/plot_eeg_erp.py | 20 +-
tutorials/plot_epoching_and_averaging.py | 11 +-
tutorials/plot_epochs_to_data_frame.py | 13 +-
tutorials/plot_forward.py | 39 +-
tutorials/plot_ica_from_raw.py | 18 +-
tutorials/plot_info.py | 54 +-
tutorials/plot_introduction.py | 16 +-
tutorials/plot_mne_dspm_source_localization.py | 49 +-
tutorials/plot_modifying_data_inplace.py | 36 +-
tutorials/plot_object_epochs.py | 24 +-
tutorials/plot_object_evoked.py | 16 +-
tutorials/plot_object_raw.py | 42 +-
tutorials/plot_point_spread.py | 25 +-
tutorials/plot_python_intro.py | 48 +-
tutorials/plot_receptive_field.py | 371 +++
tutorials/plot_sensors_decoding.py | 141 +-
tutorials/plot_sensors_time_frequency.py | 10 +-
tutorials/plot_source_alignment.py | 98 +
...plot_stats_cluster_1samp_test_time_frequency.py | 8 +-
tutorials/plot_stats_cluster_methods.py | 32 +-
tutorials/plot_stats_cluster_spatio_temporal.py | 9 +-
...ster_spatio_temporal_repeated_measures_anova.py | 2 +-
tutorials/plot_stats_cluster_time_frequency.py | 10 +-
...uster_time_frequency_repeated_measures_anova.py | 23 +-
.../plot_stats_spatio_temporal_cluster_sensors.py | 13 +-
tutorials/plot_visualize_epochs.py | 73 +-
tutorials/plot_visualize_evoked.py | 83 +-
tutorials/plot_visualize_raw.py | 68 +-
580 files changed, 50869 insertions(+), 25285 deletions(-)
delete mode 100644 debian/patches/changeset_b9958973c5e331aa488df1c514c8476d7f4c2830.diff
create mode 100644 debian/patches/deb_skip_segfaultingtests
create mode 100644 debian/patches/up_skip_test_requires_data
create mode 100644 debian/patches/up_tempita_unicode
create mode 100644 doc/_static/copybutton.js
mode change 100755 => 100644 doc/_static/favicon.ico
create mode 100644 doc/_static/flag-icon.css
create mode 100644 doc/_static/font-awesome.css
create mode 100644 doc/_static/fontawesome-webfont.eot
create mode 100644 doc/_static/fontawesome-webfont.ttf
create mode 100644 doc/_static/fontawesome-webfont.woff
create mode 100644 doc/_static/fontawesome-webfont.woff2
create mode 100644 doc/_static/fr.svg
create mode 100644 doc/_static/us.svg
create mode 100644 doc/_templates/navbar.html
create mode 100644 doc/advanced_setup.rst
create mode 100644 doc/carousel.inc
delete mode 100644 doc/cite.rst
copy doc/{contributing.rst => configure_git.rst} (58%)
create mode 100644 doc/documentation.rst
delete mode 100644 doc/manual/pitfalls.rst
mode change 100644 => 100755 doc/sphinxext/cited_mne.py
delete mode 100644 doc/tutorials.rst
rename doc/tutorials/{seven_stories_about_mne.rst => philosophy.rst} (66%)
create mode 100644 environment.yml
create mode 100644 environment2.yml
create mode 100644 examples/connectivity/plot_mixed_source_space_connectivity.py
create mode 100644 examples/datasets/plot_hf_sef_data.py
create mode 100644 examples/decoding/decoding_rsa.py
create mode 100644 examples/decoding/plot_decoding_csp_timefreq.py
create mode 100644 examples/decoding/plot_decoding_spoc_CMC.py
create mode 100644 examples/decoding/plot_receptive_field.py
delete mode 100644 examples/forward/plot_read_bem_surfaces.py
create mode 100644 examples/inverse/plot_custom_inverse_solver.py
create mode 100644 examples/inverse/plot_mixed_source_space_inverse.py
create mode 100644 examples/inverse/plot_vector_mne_solution.py
create mode 100644 examples/io/plot_read_events.py
delete mode 100644 examples/io/read_events.py
create mode 100644 examples/preprocessing/plot_head_positions.py
create mode 100644 examples/time_frequency/plot_time_frequency_erds.py
create mode 100644 examples/time_frequency/plot_time_frequency_global_field_power.py
create mode 100644 examples/visualization/plot_3d_to_2d.py
delete mode 100644 examples/visualization/plot_clickable_image.py
create mode 100644 examples/visualization/plot_eeg_on_scalp.py
create mode 100644 examples/visualization/plot_parcellation.py
create mode 100644 examples/visualization/plot_roi_erpimage_by_rt.py
create mode 100644 examples/visualization/plot_sensor_noise_level.py
create mode 100644 examples/visualization/plot_xhemi.py
delete mode 100755 mne/channels/data/montages/10-5-System_Mastoids_EGI129.csd
copy mne/channels/data/montages/{standard_alphabetic.elc => mgh60.elc} (70%)
copy mne/channels/data/montages/{standard_prefixed.elc => mgh70.elc} (75%)
copy mne/{io/tests/data => data/fsaverage}/fsaverage-fiducials.fif (100%)
create mode 100644 mne/data/fsaverage/fsaverage-head.fif
create mode 100644 mne/data/fsaverage/fsaverage-inner_skull-bem.fif
create mode 100644 mne/data/fsaverage/fsaverage-trans.fif
create mode 100644 mne/datasets/fieldtrip_cmc/__init__.py
create mode 100644 mne/datasets/fieldtrip_cmc/fieldtrip_cmc.py
create mode 100644 mne/datasets/hf_sef/__init__.py
create mode 100644 mne/datasets/hf_sef/hf_sef.py
create mode 100644 mne/datasets/mtrf/__init__.py
create mode 100644 mne/datasets/mtrf/mtrf.py
create mode 100644 mne/datasets/visual_92_categories/__init__.py
create mode 100644 mne/datasets/visual_92_categories/visual_92_categories.py
create mode 100644 mne/decoding/receptive_field.py
create mode 100644 mne/decoding/tests/test_base.py
create mode 100644 mne/decoding/tests/test_receptive_field.py
create mode 100644 mne/decoding/time_delaying_ridge.py
create mode 100644 mne/externals/funcsigs.py
delete mode 100644 mne/externals/tempita/_tempita.py
create mode 100644 mne/io/artemis123/__init__.py
create mode 100644 mne/io/artemis123/artemis123.py
create mode 100644 mne/io/artemis123/resources/Artemis123_ChannelMap.csv
create mode 100644 mne/io/artemis123/resources/Artemis123_mneLoc.csv
copy mne/{beamformer => io/artemis123}/tests/__init__.py (100%)
create mode 100644 mne/io/artemis123/tests/test_artemis123.py
create mode 100644 mne/io/artemis123/utils.py
create mode 100644 mne/io/edf/tests/test_gdf.py
create mode 100644 mne/io/egi/egimff.py
create mode 100644 mne/io/egi/events.py
create mode 100644 mne/io/egi/general.py
delete mode 100644 mne/viz/tests/__init__py
create mode 100644 tutorials/plot_configuration.py
create mode 100644 tutorials/plot_dipole_orientations.py
create mode 100644 tutorials/plot_ecog.py
create mode 100644 tutorials/plot_receptive_field.py
create mode 100644 tutorials/plot_source_alignment.py
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-mne.git
More information about the debian-med-commit
mailing list