[med-svn] [python-mne] 02/08: Update upstream source from tag 'upstream/0.15.2+dfsg'
Yaroslav Halchenko
debian at onerussian.com
Tue Dec 5 02:52:27 UTC 2017
This is an automated email from the git hooks/post-receive script.
yoh pushed a commit to branch master
in repository python-mne.
commit b927c8943a2d99ace0fe2c80db77f607c3874a2d
Merge: d69ff6c 89393dc
Author: Yaroslav Halchenko <debian at onerussian.com>
Date: Mon Dec 4 12:53:42 2017 -0500
Update upstream source from tag 'upstream/0.15.2+dfsg'
Update to upstream version '0.15.2+dfsg'
with Debian dir 11848f7c66776e0196f4ab13cad57a462efa8cca
.gitignore | 4 +-
.mailmap | 26 +-
.travis.yml | 208 +-
MANIFEST.in | 60 +-
Makefile | 47 +-
README.rst | 22 +-
appveyor.yml | 13 +-
circle.yml | 110 +-
doc/Makefile | 17 +-
doc/_static/copybutton.js | 66 +
doc/_static/favicon.ico | Bin 6687 -> 7738 bytes
doc/_static/flag-icon.css | 23 +
doc/_static/font-awesome.css | 2337 +++++++++++++++++++
doc/_static/fontawesome-webfont.eot | Bin 0 -> 165742 bytes
doc/_static/fontawesome-webfont.ttf | Bin 0 -> 165548 bytes
doc/_static/fontawesome-webfont.woff | Bin 0 -> 98024 bytes
doc/_static/fontawesome-webfont.woff2 | Bin 0 -> 77160 bytes
doc/_static/fr.svg | 7 +
doc/_static/institutions.png | Bin 25284 -> 29945 bytes
doc/_static/mne_logo.png | Bin 39669 -> 38287 bytes
doc/_static/mne_logo_small.png | Bin 868 -> 980 bytes
doc/_static/style.css | 223 +-
doc/_static/us.svg | 18 +
doc/_templates/layout.html | 39 +-
doc/_templates/navbar.html | 20 +
doc/advanced_setup.rst | 163 ++
doc/carousel.inc | 87 +
doc/cite.rst | 17 -
doc/cited.rst | 303 ++-
doc/conf.py | 139 +-
doc/{contributing.rst => configure_git.rst} | 399 +---
doc/contributing.rst | 959 +-------
doc/customizing_git.rst | 4 +
doc/documentation.rst | 710 ++++++
doc/faq.rst | 79 +-
doc/getting_started.rst | 178 +-
doc/git_links.inc | 9 +-
doc/index.rst | 257 +--
doc/install_mne_c.rst | 70 +-
doc/install_mne_python.rst | 298 +--
doc/known_projects.inc | 6 +
doc/manual/appendix/c_release_notes.rst | 2 +-
doc/manual/channel_interpolation.rst | 6 +-
doc/manual/cookbook.rst | 51 +-
doc/manual/datasets_index.rst | 134 +-
doc/manual/decoding.rst | 101 +-
doc/manual/index.rst | 93 +-
doc/manual/io.rst | 72 +-
doc/manual/matlab.rst | 6 +-
doc/manual/memory.rst | 10 +-
doc/manual/migrating.rst | 58 +-
doc/manual/pitfalls.rst | 30 -
doc/manual/preprocessing/bads.rst | 2 +
doc/manual/preprocessing/filter.rst | 2 +
doc/manual/preprocessing/overview.rst | 8 +-
doc/manual/preprocessing/ssp.rst | 30 +-
doc/manual/sample_dataset.rst | 4 +-
doc/manual/statistics.rst | 10 +-
doc/manual/visualization.rst | 2 +
doc/martinos.rst | 10 +-
doc/mne_cpp.rst | 35 +-
doc/python_reference.rst | 544 ++---
doc/references.rst | 2 +-
doc/sphinxext/cited_mne.py | 23 +-
doc/sphinxext/gen_commands.py | 2 +
doc/tutorials.rst | 192 --
...{seven_stories_about_mne.rst => philosophy.rst} | 84 +-
doc/tutorials/report.rst | 30 +-
doc/whats_new.rst | 2351 +++++++++++++-------
environment.yml | 44 +
environment2.yml | 38 +
.../connectivity/plot_cwt_sensor_connectivity.py | 16 +-
.../plot_mixed_source_space_connectivity.py | 179 ++
.../plot_mne_inverse_coherence_epochs.py | 77 +-
.../plot_mne_inverse_connectivity_spectrum.py | 10 +-
.../plot_mne_inverse_label_connectivity.py | 53 +-
.../connectivity/plot_mne_inverse_psi_visual.py | 17 +-
examples/datasets/plot_brainstorm_data.py | 8 +-
examples/datasets/plot_hf_sef_data.py | 37 +
examples/datasets/plot_megsim_data_single_trial.py | 2 +-
examples/datasets/plot_spm_faces_dataset.py | 18 +-
examples/decoding/README.txt | 6 +-
examples/decoding/decoding_rsa.py | 185 ++
examples/decoding/plot_decoding_csp_eeg.py | 77 +-
examples/decoding/plot_decoding_csp_space.py | 26 +-
examples/decoding/plot_decoding_csp_timefreq.py | 163 ++
.../plot_decoding_spatio_temporal_source.py | 141 +-
examples/decoding/plot_decoding_spoc_CMC.py | 84 +
...plot_decoding_time_generalization_conditions.py | 78 +-
.../plot_decoding_unsupervised_spatial_filter.py | 4 +-
examples/decoding/plot_decoding_xdawn_eeg.py | 33 +-
examples/decoding/plot_ems_filtering.py | 36 +-
examples/decoding/plot_linear_model_patterns.py | 72 +-
examples/decoding/plot_receptive_field.py | 265 +++
examples/forward/plot_decimate_head_surface.py | 16 +-
examples/forward/plot_forward_sensitivity_maps.py | 5 +-
.../forward/plot_left_cerebellum_volume_source.py | 3 +-
examples/forward/plot_read_bem_surfaces.py | 39 -
examples/forward/plot_source_space_morphing.py | 1 -
.../plot_compute_mne_inverse_epochs_in_label.py | 1 -
.../plot_compute_mne_inverse_raw_in_label.py | 2 +-
examples/inverse/plot_covariance_whitening_dspm.py | 13 +-
examples/inverse/plot_custom_inverse_solver.py | 180 ++
examples/inverse/plot_dics_beamformer.py | 19 +-
examples/inverse/plot_dics_source_power.py | 21 +-
examples/inverse/plot_gamma_map_inverse.py | 63 +-
examples/inverse/plot_label_from_stc.py | 1 -
examples/inverse/plot_label_source_activations.py | 9 +-
examples/inverse/plot_lcmv_beamformer.py | 46 +-
examples/inverse/plot_lcmv_beamformer_volume.py | 33 +-
examples/inverse/plot_mixed_norm_inverse.py | 85 +-
.../inverse/plot_mixed_source_space_inverse.py | 148 ++
examples/inverse/plot_mne_point_spread_function.py | 3 +-
examples/inverse/plot_rap_music.py | 18 +-
examples/inverse/plot_read_source_space.py | 20 +-
examples/inverse/plot_tf_dics.py | 16 +-
examples/inverse/plot_tf_lcmv.py | 18 +-
.../plot_time_frequency_mixed_norm_inverse.py | 82 +-
examples/inverse/plot_vector_mne_solution.py | 41 +
examples/io/README.txt | 2 +-
examples/io/plot_elekta_epochs.py | 22 +-
examples/io/plot_objects_from_arrays.py | 50 +-
examples/io/plot_read_events.py | 77 +
examples/io/read_events.py | 31 -
examples/preprocessing/plot_head_positions.py | 31 +
.../preprocessing/plot_movement_compensation.py | 7 +-
examples/preprocessing/plot_rereference_eeg.py | 44 +-
examples/preprocessing/plot_resample.py | 4 +-
examples/preprocessing/plot_run_ica.py | 6 +-
examples/preprocessing/plot_virtual_evoked.py | 4 +-
examples/preprocessing/plot_xdawn_denoising.py | 13 +-
examples/realtime/ftclient_rt_average.py | 2 +-
examples/realtime/plot_compute_rt_decoder.py | 45 +-
examples/realtime/rt_feedback_server.py | 2 +-
examples/simulation/plot_simulate_evoked_data.py | 10 +-
examples/stats/plot_linear_regression_raw.py | 9 +-
examples/stats/plot_sensor_permutation_test.py | 10 +-
examples/stats/plot_sensor_regression.py | 15 +-
.../plot_compute_raw_data_spectrum.py | 54 +-
.../plot_source_label_time_frequency.py | 10 +-
.../plot_source_space_time_frequency.py | 2 +-
examples/time_frequency/plot_temporal_whitening.py | 6 +-
.../time_frequency/plot_time_frequency_erds.py | 118 +
.../plot_time_frequency_global_field_power.py | 128 ++
.../plot_time_frequency_simulated.py | 146 +-
examples/visualization/make_report.py | 33 +-
examples/visualization/plot_3d_to_2d.py | 121 +
.../visualization/plot_channel_epochs_image.py | 12 +-
examples/visualization/plot_clickable_image.py | 66 -
examples/visualization/plot_eeg_on_scalp.py | 25 +
examples/visualization/plot_evoked_topomap.py | 1 -
examples/visualization/plot_evoked_whitening.py | 10 +-
examples/visualization/plot_meg_sensors.py | 25 +-
examples/visualization/plot_parcellation.py | 47 +
examples/visualization/plot_roi_erpimage_by_rt.py | 72 +
examples/visualization/plot_sensor_noise_level.py | 30 +
.../plot_ssp_projs_sensitivity_map.py | 4 +-
.../visualization/plot_topo_compare_conditions.py | 19 +-
examples/visualization/plot_topo_customized.py | 3 +-
examples/visualization/plot_xhemi.py | 47 +
logo/generate_mne_logos.py | 22 +-
mne/__init__.py | 18 +-
mne/annotations.py | 123 +-
mne/baseline.py | 51 +-
mne/beamformer/__init__.py | 6 +-
mne/beamformer/_dics.py | 229 +-
mne/beamformer/_lcmv.py | 1029 ++++++---
mne/beamformer/_rap_music.py | 78 +-
mne/beamformer/tests/test_dics.py | 101 +-
mne/beamformer/tests/test_lcmv.py | 264 ++-
mne/beamformer/tests/test_rap_music.py | 101 +-
mne/bem.py | 379 ++--
mne/channels/__init__.py | 13 +-
mne/channels/channels.py | 511 ++++-
.../data/montages/10-5-System_Mastoids_EGI129.csd | 467 ----
mne/channels/data/montages/mgh60.elc | 132 ++
mne/channels/data/montages/mgh70.elc | 152 ++
mne/channels/data/neighbors/__init__.py | 2 +-
mne/channels/interpolation.py | 27 +-
mne/channels/layout.py | 132 +-
mne/channels/montage.py | 681 +++---
mne/channels/tests/test_channels.py | 99 +-
mne/channels/tests/test_interpolation.py | 25 +-
mne/channels/tests/test_layout.py | 1 +
mne/channels/tests/test_montage.py | 560 +++--
mne/chpi.py | 721 ++++--
mne/commands/__init__.py | 2 +
mne/commands/mne_browse_raw.py | 3 +-
mne/commands/mne_bti2fiff.py | 3 +-
mne/commands/mne_clean_eog_ecg.py | 9 +-
mne/commands/mne_compare_fiff.py | 3 +-
mne/commands/mne_compute_proj_ecg.py | 3 +-
mne/commands/mne_compute_proj_eog.py | 3 +-
mne/commands/mne_coreg.py | 42 +-
mne/commands/mne_flash_bem.py | 4 +-
mne/commands/mne_freeview_bem_surfaces.py | 8 +-
mne/commands/mne_kit2fiff.py | 7 +
mne/commands/mne_make_scalp_surfaces.py | 67 +-
mne/commands/mne_maxfilter.py | 3 +-
mne/commands/mne_report.py | 11 +-
mne/commands/mne_show_fiff.py | 19 +-
mne/commands/mne_show_info.py | 1 +
mne/commands/mne_surf2bem.py | 10 +-
mne/commands/mne_watershed_bem.py | 7 +-
mne/commands/tests/test_commands.py | 48 +-
mne/commands/utils.py | 49 +-
mne/connectivity/__init__.py | 3 +-
mne/connectivity/effective.py | 17 +-
mne/connectivity/spectral.py | 642 +++---
mne/connectivity/tests/test_effective.py | 2 +-
mne/connectivity/tests/test_spectral.py | 103 +-
mne/connectivity/utils.py | 3 +-
mne/coreg.py | 197 +-
mne/cov.py | 518 +++--
mne/cuda.py | 52 +-
mne/data/__init__.py | 1 +
mne/data/coil_def.dat | 78 +
mne/data/fsaverage/fsaverage-fiducials.fif | Bin 0 -> 260 bytes
mne/data/fsaverage/fsaverage-head.fif | Bin 0 -> 97892 bytes
mne/data/fsaverage/fsaverage-inner_skull-bem.fif | Bin 0 -> 491944 bytes
mne/data/fsaverage/fsaverage-trans.fif | Bin 0 -> 212 bytes
mne/data/image/custom_layout.lout | 47 +-
mne/datasets/__init__.py | 10 +-
mne/datasets/_fake/__init__.py | 3 +-
mne/datasets/_fake/_fake.py | 4 +-
mne/datasets/brainstorm/__init__.py | 3 +-
mne/datasets/brainstorm/bst_auditory.py | 21 +-
mne/datasets/brainstorm/bst_phantom_ctf.py | 21 +-
mne/datasets/brainstorm/bst_phantom_elekta.py | 22 +-
mne/datasets/brainstorm/bst_raw.py | 22 +-
mne/datasets/brainstorm/bst_resting.py | 21 +-
mne/datasets/eegbci/__init__.py | 3 +-
mne/datasets/eegbci/eegbci.py | 96 +-
mne/datasets/fieldtrip_cmc/__init__.py | 3 +
mne/datasets/fieldtrip_cmc/fieldtrip_cmc.py | 32 +
mne/datasets/hf_sef/__init__.py | 3 +
mne/datasets/hf_sef/hf_sef.py | 99 +
mne/datasets/megsim/__init__.py | 3 +-
mne/datasets/megsim/megsim.py | 55 +-
mne/datasets/megsim/urls.py | 6 +-
mne/datasets/misc/__init__.py | 3 +-
mne/datasets/misc/_misc.py | 2 +-
mne/datasets/mtrf/__init__.py | 3 +
mne/datasets/mtrf/mtrf.py | 30 +
mne/datasets/multimodal/__init__.py | 3 +-
mne/datasets/multimodal/multimodal.py | 4 +-
mne/datasets/sample/__init__.py | 3 +-
mne/datasets/sample/sample.py | 4 +-
mne/datasets/somato/__init__.py | 3 +-
mne/datasets/somato/somato.py | 4 +-
mne/datasets/spm_face/__init__.py | 3 +-
mne/datasets/spm_face/spm_data.py | 4 +-
mne/datasets/testing/__init__.py | 3 +-
mne/datasets/testing/_testing.py | 4 +-
mne/datasets/tests/test_datasets.py | 12 +-
mne/datasets/utils.py | 595 +++--
mne/datasets/visual_92_categories/__init__.py | 5 +
.../visual_92_categories/visual_92_categories.py | 78 +
mne/decoding/__init__.py | 11 +-
mne/decoding/base.py | 914 +++-----
mne/decoding/csp.py | 362 ++-
mne/decoding/ems.py | 60 +-
mne/decoding/mixin.py | 5 +-
mne/decoding/receptive_field.py | 486 ++++
mne/decoding/search_light.py | 377 ++--
mne/decoding/tests/test_base.py | 230 ++
mne/decoding/tests/test_csp.py | 149 +-
mne/decoding/tests/test_ems.py | 19 +-
mne/decoding/tests/test_receptive_field.py | 528 +++++
mne/decoding/tests/test_search_light.py | 145 +-
mne/decoding/tests/test_time_frequency.py | 10 +-
mne/decoding/tests/test_time_gen.py | 88 +-
mne/decoding/tests/test_transformer.py | 134 +-
mne/decoding/time_delaying_ridge.py | 343 +++
mne/decoding/time_frequency.py | 48 +-
mne/decoding/time_gen.py | 100 +-
mne/decoding/transformer.py | 509 ++---
mne/defaults.py | 22 +-
mne/dipole.py | 595 +++--
mne/epochs.py | 631 +++---
mne/event.py | 201 +-
mne/evoked.py | 300 ++-
mne/externals/FieldTrip.py | 2 +-
mne/externals/__init__.py | 7 +-
mne/externals/funcsigs.py | 815 +++++++
mne/externals/tempita/__init__.py | 1305 ++++++++++-
mne/externals/tempita/_looper.py | 4 +-
mne/externals/tempita/_tempita.py | 1182 ----------
mne/externals/tempita/compat3.py | 20 +-
mne/filter.py | 1467 ++++++------
mne/fixes.py | 794 ++++++-
mne/forward/__init__.py | 5 +-
mne/forward/_compute_forward.py | 60 +-
mne/forward/_field_interpolation.py | 52 +-
mne/forward/_lead_dots.py | 56 +-
mne/forward/_make_forward.py | 242 +-
mne/forward/forward.py | 493 ++--
mne/forward/tests/test_field_interpolation.py | 53 +-
mne/forward/tests/test_forward.py | 138 +-
mne/forward/tests/test_make_forward.py | 66 +-
mne/gui/__init__.py | 102 +-
mne/gui/_backend.py | 9 +-
mne/gui/_coreg_gui.py | 885 +++++---
mne/gui/_fiducials_gui.py | 116 +-
mne/gui/_file_traits.py | 365 +--
mne/gui/_help.py | 2 +-
mne/gui/_kit2fiff_gui.py | 195 +-
mne/gui/_marker_gui.py | 81 +-
mne/gui/_viewer.py | 231 +-
mne/gui/tests/test_coreg_gui.py | 146 +-
mne/gui/tests/test_fiducials_gui.py | 9 +-
mne/gui/tests/test_file_traits.py | 42 +-
mne/gui/tests/test_kit2fiff_gui.py | 59 +-
mne/gui/tests/test_marker_gui.py | 13 +-
mne/inverse_sparse/__init__.py | 5 +-
mne/inverse_sparse/_gamma_map.py | 94 +-
mne/inverse_sparse/mxne_debiasing.py | 7 +-
mne/inverse_sparse/mxne_inverse.py | 313 ++-
mne/inverse_sparse/mxne_optim.py | 649 +++---
mne/inverse_sparse/tests/test_gamma_map.py | 94 +-
mne/inverse_sparse/tests/test_mxne_inverse.py | 118 +-
mne/inverse_sparse/tests/test_mxne_optim.py | 19 +-
mne/io/__init__.py | 11 +-
mne/io/array/__init__.py | 2 +-
mne/io/array/array.py | 33 +-
mne/io/array/tests/test_array.py | 63 +-
mne/io/artemis123/__init__.py | 7 +
mne/io/artemis123/artemis123.py | 440 ++++
.../artemis123/resources/Artemis123_ChannelMap.csv | 146 ++
mne/io/artemis123/resources/Artemis123_mneLoc.csv | 144 ++
mne/{data => io/artemis123/tests}/__init__.py | 0
mne/io/artemis123/tests/test_artemis123.py | 100 +
mne/io/artemis123/utils.py | 138 ++
mne/io/base.py | 771 ++++---
mne/io/brainvision/__init__.py | 2 +-
mne/io/brainvision/brainvision.py | 254 ++-
mne/io/brainvision/tests/test_brainvision.py | 335 ++-
mne/io/bti/__init__.py | 2 +-
mne/io/bti/bti.py | 226 +-
mne/io/bti/read.py | 44 +-
mne/io/bti/tests/test_bti.py | 18 +-
mne/io/cnt/__init__.py | 2 +
mne/io/cnt/cnt.py | 93 +-
mne/io/compensator.py | 11 +-
mne/io/constants.py | 52 +-
mne/io/ctf/__init__.py | 2 +-
mne/io/ctf/constants.py | 2 +-
mne/io/ctf/ctf.py | 38 +-
mne/io/ctf/eeg.py | 8 +-
mne/io/ctf/hc.py | 7 +-
mne/io/ctf/info.py | 58 +-
mne/io/ctf/res4.py | 25 +-
mne/io/ctf/tests/test_ctf.py | 32 +-
mne/io/ctf/trans.py | 20 +-
mne/io/ctf_comp.py | 11 +-
mne/io/diff.py | 5 +-
mne/io/edf/__init__.py | 4 +-
mne/io/edf/edf.py | 1067 +++++++--
mne/io/edf/tests/test_edf.py | 64 +-
mne/io/edf/tests/test_gdf.py | 92 +
mne/io/eeglab/__init__.py | 4 +-
mne/io/eeglab/eeglab.py | 171 +-
mne/io/eeglab/tests/test_eeglab.py | 115 +-
mne/io/egi/__init__.py | 4 +-
mne/io/egi/egi.py | 98 +-
mne/io/egi/egimff.py | 576 +++++
mne/io/egi/events.py | 165 ++
mne/io/egi/general.py | 162 ++
mne/io/egi/tests/test_egi.py | 87 +-
mne/io/fiff/__init__.py | 2 +
mne/io/fiff/raw.py | 168 +-
mne/io/fiff/tests/test_raw_fiff.py | 350 ++-
mne/io/kit/__init__.py | 2 +-
mne/io/kit/constants.py | 267 ++-
mne/io/kit/coreg.py | 8 +-
mne/io/kit/kit.py | 566 ++---
mne/io/kit/tests/test_kit.py | 95 +-
mne/io/matrix.py | 9 +-
mne/io/meas_info.py | 652 ++++--
mne/io/nicolet/__init__.py | 2 +-
mne/io/nicolet/nicolet.py | 22 +-
mne/io/open.py | 46 +-
mne/io/pick.py | 119 +-
mne/io/proc_history.py | 139 +-
mne/io/proj.py | 220 +-
mne/io/reference.py | 350 ++-
mne/io/tag.py | 63 +-
mne/io/tests/test_apply_function.py | 25 +-
mne/io/tests/test_compensator.py | 11 +-
mne/io/tests/test_meas_info.py | 55 +-
mne/io/tests/test_pick.py | 23 +-
mne/io/tests/test_proc_history.py | 9 +-
mne/io/tests/test_raw.py | 14 +-
mne/io/tests/test_reference.py | 192 +-
mne/io/tree.py | 8 +-
mne/io/utils.py | 15 +-
mne/io/write.py | 96 +-
mne/label.py | 190 +-
mne/minimum_norm/__init__.py | 2 +-
mne/minimum_norm/inverse.py | 454 ++--
mne/minimum_norm/psf_ctf.py | 34 +-
mne/minimum_norm/tests/test_inverse.py | 319 ++-
mne/minimum_norm/tests/test_psf_ctf.py | 11 +-
mne/minimum_norm/tests/test_time_frequency.py | 61 +-
mne/minimum_norm/time_frequency.py | 133 +-
mne/misc.py | 8 +-
mne/parallel.py | 32 +-
mne/preprocessing/__init__.py | 3 +-
mne/preprocessing/_fine_cal.py | 6 +-
mne/preprocessing/bads.py | 2 +-
mne/preprocessing/ctps_.py | 10 +-
mne/preprocessing/ecg.py | 55 +-
mne/preprocessing/eog.py | 80 +-
mne/preprocessing/ica.py | 479 ++--
mne/preprocessing/infomax_.py | 29 +-
mne/preprocessing/maxfilter.py | 36 +-
mne/preprocessing/maxwell.py | 551 ++---
mne/preprocessing/peak_finder.py | 6 +-
mne/preprocessing/ssp.py | 93 +-
mne/preprocessing/stim.py | 42 +-
mne/preprocessing/tests/test_ecg.py | 9 +-
mne/preprocessing/tests/test_eeglab_infomax.py | 21 +-
mne/preprocessing/tests/test_eog.py | 11 +-
mne/preprocessing/tests/test_ica.py | 226 +-
mne/preprocessing/tests/test_maxwell.py | 196 +-
mne/preprocessing/tests/test_ssp.py | 28 +-
mne/preprocessing/tests/test_stim.py | 9 +-
mne/preprocessing/tests/test_xdawn.py | 28 +-
mne/preprocessing/xdawn.py | 120 +-
mne/proj.py | 29 +-
mne/realtime/__init__.py | 2 +-
mne/realtime/client.py | 49 +-
mne/realtime/epochs.py | 75 +-
mne/realtime/fieldtrip_client.py | 52 +-
mne/realtime/mockclient.py | 21 +-
mne/realtime/stim_server_client.py | 58 +-
mne/realtime/tests/test_mockclient.py | 69 +-
mne/report.py | 429 ++--
mne/selection.py | 20 +-
mne/simulation/__init__.py | 3 +-
mne/simulation/evoked.py | 93 +-
mne/simulation/metrics.py | 6 +-
mne/simulation/raw.py | 288 ++-
mne/simulation/source.py | 6 +-
mne/simulation/tests/test_evoked.py | 58 +-
mne/simulation/tests/test_metrics.py | 2 +-
mne/simulation/tests/test_raw.py | 186 +-
mne/simulation/tests/test_source.py | 14 +-
mne/source_estimate.py | 1527 ++++++++-----
mne/source_space.py | 709 +++---
mne/stats/__init__.py | 7 +-
mne/stats/cluster_level.py | 448 ++--
mne/stats/multi_comp.py | 7 +-
mne/stats/parametric.py | 30 +-
mne/stats/permutations.py | 49 +-
mne/stats/regression.py | 71 +-
mne/stats/tests/test_cluster_level.py | 198 +-
mne/stats/tests/test_permutations.py | 25 +-
mne/stats/tests/test_regression.py | 35 +-
mne/surface.py | 620 +++---
mne/tests/common.py | 11 +-
mne/tests/test_annotations.py | 162 +-
mne/tests/test_bem.py | 8 +-
mne/tests/test_chpi.py | 289 ++-
mne/tests/test_coreg.py | 51 +-
mne/tests/test_cov.py | 208 +-
mne/tests/test_dipole.py | 123 +-
mne/tests/test_docstring_parameters.py | 201 +-
mne/tests/test_epochs.py | 624 +++---
mne/tests/test_event.py | 35 +-
mne/tests/test_evoked.py | 34 +-
mne/tests/test_filter.py | 263 ++-
mne/tests/test_fixes.py | 19 +-
mne/tests/test_import_nesting.py | 4 +-
mne/tests/test_label.py | 73 +-
mne/tests/test_line_endings.py | 6 +-
mne/tests/test_proj.py | 81 +-
mne/tests/test_report.py | 42 +-
mne/tests/test_selection.py | 6 +-
mne/tests/test_source_estimate.py | 469 ++--
mne/tests/test_source_space.py | 180 +-
mne/tests/test_surface.py | 41 +-
mne/tests/test_transforms.py | 191 +-
mne/tests/test_utils.py | 148 +-
mne/time_frequency/__init__.py | 18 +-
mne/time_frequency/_stockwell.py | 84 +-
mne/time_frequency/ar.py | 156 +-
mne/time_frequency/csd.py | 84 +-
mne/time_frequency/multitaper.py | 172 +-
mne/time_frequency/psd.py | 179 +-
mne/time_frequency/stft.py | 12 +-
mne/time_frequency/tests/test_ar.py | 46 +-
mne/time_frequency/tests/test_csd.py | 24 +-
mne/time_frequency/tests/test_multitaper.py | 52 +-
mne/time_frequency/tests/test_psd.py | 69 +-
mne/time_frequency/tests/test_stockwell.py | 11 +-
mne/time_frequency/tests/test_tfr.py | 153 +-
mne/time_frequency/tfr.py | 723 +++---
mne/transforms.py | 701 +++++-
mne/utils.py | 693 +++---
mne/viz/_3d.py | 2237 ++++++++++++++++---
mne/viz/__init__.py | 10 +-
mne/viz/circle.py | 14 +-
mne/viz/decoding.py | 22 +-
mne/viz/epochs.py | 778 +++++--
mne/viz/evoked.py | 1229 +++++-----
mne/viz/ica.py | 158 +-
mne/viz/misc.py | 371 ++-
mne/viz/montage.py | 86 +-
mne/viz/raw.py | 578 +++--
mne/viz/tests/__init__py | 0
mne/viz/tests/test_3d.py | 297 ++-
mne/viz/tests/test_decoding.py | 110 +-
mne/viz/tests/test_epochs.py | 87 +-
mne/viz/tests/test_evoked.py | 85 +-
mne/viz/tests/test_ica.py | 61 +-
mne/viz/tests/test_misc.py | 37 +-
mne/viz/tests/test_montage.py | 42 +-
mne/viz/tests/test_raw.py | 212 +-
mne/viz/tests/test_topo.py | 106 +-
mne/viz/tests/test_topomap.py | 156 +-
mne/viz/tests/test_utils.py | 50 +-
mne/viz/topo.py | 334 ++-
mne/viz/topomap.py | 804 ++++---
mne/viz/utils.py | 955 ++++++--
setup.cfg | 29 +-
setup.py | 67 +-
tutorials/plot_artifacts_correction_filtering.py | 31 +-
tutorials/plot_artifacts_correction_ica.py | 66 +-
.../plot_artifacts_correction_maxwell_filtering.py | 5 +-
tutorials/plot_artifacts_correction_rejection.py | 10 +-
tutorials/plot_artifacts_correction_ssp.py | 20 +-
tutorials/plot_artifacts_detection.py | 3 +-
tutorials/plot_background_filtering.py | 334 +--
tutorials/plot_brainstorm_auditory.py | 37 +-
tutorials/plot_brainstorm_phantom_ctf.py | 13 +-
tutorials/plot_brainstorm_phantom_elekta.py | 81 +-
tutorials/plot_compute_covariance.py | 79 +-
tutorials/plot_configuration.py | 87 +
tutorials/plot_creating_data_structures.py | 55 +-
tutorials/plot_dipole_fit.py | 11 +-
tutorials/plot_dipole_orientations.py | 206 ++
tutorials/plot_ecog.py | 76 +
tutorials/plot_eeg_erp.py | 20 +-
tutorials/plot_epoching_and_averaging.py | 11 +-
tutorials/plot_epochs_to_data_frame.py | 13 +-
tutorials/plot_forward.py | 39 +-
tutorials/plot_ica_from_raw.py | 18 +-
tutorials/plot_info.py | 54 +-
tutorials/plot_introduction.py | 16 +-
tutorials/plot_mne_dspm_source_localization.py | 49 +-
tutorials/plot_modifying_data_inplace.py | 36 +-
tutorials/plot_object_epochs.py | 24 +-
tutorials/plot_object_evoked.py | 16 +-
tutorials/plot_object_raw.py | 42 +-
tutorials/plot_point_spread.py | 25 +-
tutorials/plot_python_intro.py | 48 +-
tutorials/plot_receptive_field.py | 371 +++
tutorials/plot_sensors_decoding.py | 141 +-
tutorials/plot_sensors_time_frequency.py | 10 +-
tutorials/plot_source_alignment.py | 98 +
...plot_stats_cluster_1samp_test_time_frequency.py | 8 +-
tutorials/plot_stats_cluster_methods.py | 32 +-
tutorials/plot_stats_cluster_spatio_temporal.py | 9 +-
...ster_spatio_temporal_repeated_measures_anova.py | 2 +-
tutorials/plot_stats_cluster_time_frequency.py | 10 +-
...uster_time_frequency_repeated_measures_anova.py | 23 +-
.../plot_stats_spatio_temporal_cluster_sensors.py | 13 +-
tutorials/plot_visualize_epochs.py | 73 +-
tutorials/plot_visualize_evoked.py | 83 +-
tutorials/plot_visualize_raw.py | 68 +-
571 files changed, 50906 insertions(+), 25018 deletions(-)
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