[med-svn] [crux] 02/05: Update to latest upstream changes

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository crux.

commit ba23bbeed8ac706d57d5140b25617d5e6447f6f6
Author: Andreas Tille <tille at debian.org>
Date:   Tue Dec 5 13:20:15 2017 +0100

    Update to latest upstream changes
---
 debian/changelog       |  2 +-
 debian/compat          |  2 +-
 debian/control         | 20 +++++++++++++-------
 debian/copyright       |  5 ++---
 debian/get-orig-source | 34 ----------------------------------
 debian/rules           |  2 --
 debian/watch           |  4 +++-
 7 files changed, 20 insertions(+), 49 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index 367f57a..9bbad5b 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,4 +1,4 @@
-crux-toolkit (0.0.r16826-1) UNRELEASED; urgency=low
+crux (3.1-1) UNRELEASED; urgency=low
 
   * Initial release (Closes: #<bug>)
 
diff --git a/debian/compat b/debian/compat
index ec63514..f599e28 100644
--- a/debian/compat
+++ b/debian/compat
@@ -1 +1 @@
-9
+10
diff --git a/debian/control b/debian/control
index cd07d6c..df0aa8d 100644
--- a/debian/control
+++ b/debian/control
@@ -1,18 +1,24 @@
-Source: crux-toolkit
+Source: crux
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Andreas Tille <tille at debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 9)
-Standards-Version: 3.9.6
+Build-Depends: debhelper (>= 10)
+Standards-Version: 4.1.1
 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/crux-toolkit/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/crux-toolkit/trunk/
-Homepage: http://cruxtoolkit.sourceforge.net/
+Homepage: http://crux.ms/
 
 Package: crux-toolkit
 Architecture: any
 Depends: ${misc:Depends},
          ${shlibs:Depends}
-Description: toolkit for tandem mass spectrometry analysis 
- Crux is a software toolkit for tandem mass spectrometry analysis, with a
- focus on peptide identification.
+Description: toolkit for tandem mass spectrometry analysis
+ The Crux mass spectrometry analysis toolkit is an open source project
+ that aims to provide users with a cross-platform suite of analysis tools
+ for interpreting protein mass spectrometry data. The toolkit includes
+ several search engines for both standard and cross-linked database
+ search, as well as a variety of pre- and post-processing engines for
+ assigning high-resolution precursor masses to spectra, assigning
+ statistical confidence estimates to spectra, peptides and proteins, and
+ performing label free quantification.
diff --git a/debian/copyright b/debian/copyright
index 831340b..8faf75d 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -1,5 +1,5 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
-Upstream-Name: crux-toolkit
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: Crux
 Source: http://sourceforge.net/p/cruxtoolkit/code/HEAD/tree/crux-toolkit/
 
 Files: *
@@ -15,4 +15,3 @@ License: Apache-2.0
 License: Apache-2.0
  On Debian systems you can find the full text of the Apache License V2.0
  at /usr/share/common-licenses/Apache-2.0
-
diff --git a/debian/get-orig-source b/debian/get-orig-source
deleted file mode 100755
index 821b7f4..0000000
--- a/debian/get-orig-source
+++ /dev/null
@@ -1,34 +0,0 @@
-#!/bin/sh
-# if you need to repack for whatever reason you can
-# use this script via uscan or directly
-#
-# FIXME: currently the code is not conform to Debian Policy
-#        http://www.debian.org/doc/debian-policy/ch-source.html
-#        "get-orig-source (optional)"
-#        This target may be invoked in any directory, ...
-# --> currently it is assumed the script is called in the
-#     source directory featuring the debian/ dir
-
-COMPRESS=xz
-
-set -e
-set -x
-NAME=`dpkg-parsechangelog | awk '/^Source/ { print $2 }'`
-VERSION=`dpkg-parsechangelog | awk '/^Version:/ { print $2 }' | sed 's/\([0-9\.]\+\)-[0-9]\+$/\1/'`
-
-## NO tags no branches
-SVNURI="svn://svn.code.sf.net/p/cruxtoolkit/code/crux/trunk/"
-revision=`LANG=C svn info ${SVNURI} | grep "^Last Changed Rev:" | sed 's/Last Changed Rev: *//'`
-VERSION=`echo ${VERSION}| sed "s/.r[0-9]\+$//"`.r${revision}
-
-TARDIR=${NAME}-${VERSION}
-
-mkdir -p ../tarballs
-cd ../tarballs
-# svn export conserves time stamps of the files, checkout does not
-LC_ALL=C svn export ${SVNURI} ${TARDIR} >/dev/null 2>/dev/null || true
-
-find ${TARDIR} -name .svnignore -delete                                                                   
-
-GZIP="--best --no-name" tar --owner=root --group=root --mode=a+rX -caf "$NAME"_"$VERSION".orig.tar.${COMPRESS} "${TARDIR}"
-rm -rf ${TARDIR}
diff --git a/debian/rules b/debian/rules
index 7759a80..440a381 100755
--- a/debian/rules
+++ b/debian/rules
@@ -5,5 +5,3 @@
 %:
 	dh $@
 
-get-orig-source:
-	sh debian/get-orig-source
diff --git a/debian/watch b/debian/watch
index d8ef91e..f0f636b 100644
--- a/debian/watch
+++ b/debian/watch
@@ -1 +1,3 @@
-# There is no tarball download location, this software is only available in SVN
+version=4
+
+https://github.com/crux-toolkit/crux-toolkit/releases .*/archive/crux at ANY_VERSION@@ARCHIVE_EXT@
\ No newline at end of file

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