[med-svn] [ecell] 11/14: Clean up matedata
Andreas Tille
tille at debian.org
Tue Dec 5 14:17:56 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository ecell.
commit 703999358b2817fdf269185eb022ff9e8533bbec
Author: Andreas Tille <tille at debian.org>
Date: Tue Dec 5 15:14:15 2017 +0100
Clean up matedata
---
README.status | 6 ---
debian/changelog | 20 +-------
debian/control | 73 ++++++++++++++--------------
debian/rules | 144 -------------------------------------------------------
debian/watch | 5 +-
5 files changed, 41 insertions(+), 207 deletions(-)
diff --git a/README.status b/README.status
deleted file mode 100644
index 100d2d3..0000000
--- a/README.status
+++ /dev/null
@@ -1,6 +0,0 @@
----
-Format: 1
-Status: draft
-Comment: >
- Work on this project was started by Steffen M�ller but has stalled.
- Feel free to take it over.
diff --git a/debian/changelog b/debian/changelog
index 98dcf65..b77bce6 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,24 +1,6 @@
ecell (3.2.2-1) UNRELEASED; urgency=low
* Initial Release (Closes: #241195).
- * TODO: check dependencies:
- - is it correct to replace python2.2-xmlbase by python?
- - is it correct to replace python2.2-numeric by python-numpy?
- * TODO: take care of boost compile errors
- [ Thorsten Alteholz ]
- * new upstream version
- * debian/control: dependencies changed
-
- -- DMPT <debian-med-packaging at lists.alioth.debian.org> Wed, 19 Oct 2011 18:00:00 +0200
-
-ecell (3.1.100-2) UNRELEASED; urgency=low
-
- [Charles Plessy]
- * Changed the doc-base section according to the new policy.
-
- [ Steffen Moeller ]
- Requires /usr/bin/python to symlink to python2.2
-
- -- Steffen Moeller <moeller at pzr.uni-rostock.de> Wed, 10 Mar 2004 22:08:00 +0100
+ -- Steffen Moeller <moeller at pzr.uni-rostock.de> Tue, 05 Dec 2017 15:12:07 +0100
diff --git a/debian/control b/debian/control
index bd2c33e..9f342b8 100644
--- a/debian/control
+++ b/debian/control
@@ -1,38 +1,39 @@
Source: ecell
-Section: science
-Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-DM-Upload-Allowed: yes
Uploaders: Steffen Moeller <moeller at pzr.uni-rostock.de>
-Build-Depends: debhelper (>= 9),
- python-numpy,
- python-dev,
- python-gtk2,
- python-glade2,
- g++ (>= 3.3),
- libgsl0-dev,
- libboost-python-dev,
- automake,
- autoconf,
- libtool,
- python-gnome2,
- python-ply,
- expect,
- doxygen,
- graphviz,
- docbook-utils,
- ghostscript,
- docbook-to-man
-Standards-Version: 3.6.0
+Section: science
+Priority: optional
+Build-Depends: debhelper (>= 9),
+ python-numpy,
+ python-dev,
+ python-gtk2,
+ python-glade2,
+ g++,
+ libgsl0-dev,
+ libboost-python-dev,
+ automake,
+ autoconf,
+ libtool,
+ python-gnome2,
+ python-ply,
+ expect,
+ doxygen,
+ graphviz,
+ docbook-utils,
+ ghostscript,
+ docbook-to-man
+Standards-Version: 4.1.1
Homepage: http://www.e-cell.org/
Package: ecell
Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends},
- libgsl0,
- libgnome2-0,
- python-numpy,
- python-glade2
+Depends: ${shlibs:Depends},
+ ${misc:Depends},
+ libgsl0,
+ libgnome2-0,
+ python-numpy,
+ python-glade2
+Recommends: ecell-doc
Description: Concept and environment for constructing virtual cells on computers
The E-Cell Project is an international research project aiming at
developing necessary theoretical supports, technologies and software
@@ -40,20 +41,20 @@ Description: Concept and environment for constructing virtual cells on computers
.
The E-Cell System is an object-oriented software suite for modeling,
simulation, and analysis of large scale complex systems such as
- biological cells, architected by Kouichi Takahashi and written by
- a team of developers.
+ biological cells, architected by Kouichi Takahashi and written by a team
+ of developers.
.
- The core part of the system, E-Cell
- Simulation Environment version 3, allows many components driven by
- multiple algorithms with different timescales to coexist.
+ The core part of the system, E-Cell Simulation Environment version 3,
+ allows many components driven by multiple algorithms with different
+ timescales to coexist.
.
E-Cell System consists of the following three major parts:
* E-Cell Simulation Environment (or E-Cell SE)
* E-Cell Modeling Environment (or E-Cell ME)
- * E-Cell Analysis Toolkit
+ * E-Cell Analysis Toolkit
.
- This package contains all these parts, only the documentation is distributed separately.
-Recommends: ecell-doc
+ This package contains all these parts, only the documentation is
+ distributed separately.
Package: ecell-doc
Architecture: all
diff --git a/debian/rules b/debian/rules
old mode 100644
new mode 100755
index 52333d7..fe8c308
--- a/debian/rules
+++ b/debian/rules
@@ -44,147 +44,3 @@ override_dh_clean:
#[ -f Makefile ] && $(MAKE) clean
#[ -f doc/Makefile ] && $(MAKE) -C doc clean
-#### This has to be exported to make some magic below work.
-###export DH_OPTIONS
-###
-#### These are used for cross-compiling and for saving the configure script
-#### from having to guess our platform (since we know it already)
-###DEB_HOST_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_HOST_GNU_TYPE)
-###DEB_BUILD_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_BUILD_GNU_TYPE)
-###
-###
-###CFLAGS = -Wall -g
-###
-###ifneq (,$(findstring noopt,$(DEB_BUILD_OPTIONS)))
-### CFLAGS += -O0
-###else
-### CFLAGS += -O2
-###endif
-###ifeq (,$(findstring nostrip,$(DEB_BUILD_OPTIONS)))
-### INSTALL_PROGRAM += -s
-###endif
-###
-###configure: configure.in
-### dh_testdir
-### ./autogen.sh --enable-static=no --host=$(DEB_HOST_GNU_TYPE) --build=$(DEB_BUILD_GNU_TYPE) --prefix=/usr --mandir=\$${prefix}/share/man --infodir=\$${prefix}/share/info
-###
-###config.status: configure
-### dh_testdir
-### # Add here commands to configure the package.
-### CFLAGS="$(CFLAGS)" ./configure --enable-static=no --host=$(DEB_HOST_GNU_TYPE) --build=$(DEB_BUILD_GNU_TYPE) --prefix=/usr --mandir=\$${prefix}/share/man --infodir=\$${prefix}/share/info
-### #CFLAGS="$(CFLAGS)" ./configure --disable-gtk --host=$(DEB_HOST_GNU_TYPE) --build=$(DEB_BUILD_GNU_TYPE) --prefix=/usr --mandir=\$${prefix}/share/man --infodir=\$${prefix}/share/info
-###
-###
-####Architecture
-###build: ecell.1 build-arch build-indep
-###
-###build-arch: build-arch-stamp
-###build-arch-stamp: config.status
-###
-### # Add here commands to compile the arch part of the package.
-### $(MAKE)
-### touch build-arch-stamp
-###
-###build-indep: build-indep-stamp
-###build-indep-stamp: config.status
-###
-### # Add here commands to compile the indep part of the package.
-### $(MAKE) doc
-### touch build-indep-stamp
-###
-###clean:
-### dh_testdir
-### dh_testroot
-### rm -f build-arch-stamp build-indep-stamp #CONFIGURE-STAMP#
-###
-### # Add here commands to clean up after the build process.
-### -$(MAKE) clean
-### -$(MAKE) -C doc clean
-###ifneq "$(wildcard /usr/share/misc/config.sub)" ""
-### cp -f /usr/share/misc/config.sub config.sub
-###endif
-###ifneq "$(wildcard /usr/share/misc/config.guess)" ""
-### cp -f /usr/share/misc/config.guess config.guess
-###endif
-### dh_clean ecell.1 install-sh mkinstalldirs missing py-compile ecell/libecs/libecs.so doc/users-manual/ecell3-users-manual.pdf doc/users-manual/ecell3-users-manual.pdf doc/refman/refman.pdf
-###
-###ecell.1: ecell.sgml
-### docbook-to-man $< > $@
-### -mkdir -p $(CURDIR)/debian/ecell/usr/share/man/man1
-### for i in dmcompile ecell3-em2eml ecell3-python ecell3-session-manager gecell3-session dmgen ecell3-eml2em ecell3-sbml2eml eri2eml rd2dm ecell3-dmc ecell3-model-editor ecell3-session gecell toollauncher; do (cd $(CURDIR)/debian/ecell/usr/share/man/man1 && ln -sf ecell.1 $$i.1); done
-###
-###
-###install: install-indep install-arch
-###install-indep:
-### dh_testdir
-### dh_testroot
-### dh_clean -k -i
-### dh_installdirs -i
-###
-### # Add here commands to install the indep part of the package into
-### # debian/<package>-doc.
-### #INSTALLDOC#
-### mkdir -p $(CURDIR)/debian/ecell-doc/usr/share/doc/ecell-3.1.100
-### $(MAKE) prefix=$(CURDIR)/debian/ecell-doc/usr doc-install
-### mv $(CURDIR)/debian/ecell-doc/usr/share/doc/ecell-3.1.100 $(CURDIR)/debian/ecell-doc/usr/share/doc/ecell
-###
-### dh_install -i
-###
-###install-arch:
-### dh_testdir
-### dh_testroot
-### dh_clean -k -s
-### dh_installdirs -s
-###
-### # Add here commands to install the arch part of the package into
-### # debian/tmp.
-### $(MAKE) prefix=$(CURDIR)/debian/ecell/usr install
-###
-### dh_install -s
-###
-#### Must not depend on anything. This is to be called by
-#### binary-arch/binary-indep
-#### in another 'make' thread.
-###binary-common:
-### dh_testdir
-### dh_testroot
-### dh_installchangelogs ChangeLog
-### dh_installdocs
-### dh_installexamples
-#### dh_installmenu
-#### dh_installdebconf
-#### dh_installlogrotate
-#### dh_installemacsen
-#### dh_installpam
-#### dh_installmime
-#### dh_installinit
-#### dh_installcron
-#### dh_installinfo
-### dh_installman
-### dh_link
-### dh_strip
-### dh_compress
-### dh_fixperms
-#### dh_perl
-### dh_python -V 2.2
-### dh_makeshlibs
-### dh_installdeb
-### dh_shlibdeps
-### dh_gencontrol
-### dh_md5sums
-### dh_builddeb
-#### Build architecture independant packages using the common target.
-###binary-indep: build-indep install-indep
-### $(MAKE) -f debian/rules DH_OPTIONS=-i binary-common
-###
-#### Build architecture dependant packages using the common target.
-###binary-arch: build-arch install-arch
-### $(MAKE) -f debian/rules DH_OPTIONS=-a binary-common
-###
-###binary: binary-arch binary-indep
-###.PHONY: build clean binary-indep binary-arch binary install install-indep install-arch
-
-get-orig-source:
- mkdir -p ../tarballs
- uscan --verbose --force-download --destdir=../tarballs
-
diff --git a/debian/watch b/debian/watch
index eab4b20..0000490 100644
--- a/debian/watch
+++ b/debian/watch
@@ -1,2 +1,3 @@
-version=3
-http://sf.net/ecell/ecell-(.*)\.tar.gz
+version=4
+
+https://github.com/ecell/ecell4/tags .*/v at ANY_VERSION@@ARCHIVE_EXT@
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