[med-svn] [emmax] 07/10: Normalise packaging, point in d/copyright to alternative download location, citation

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository emmax.

commit 0b085108cfe35d5d5816af9af218d911d4a55a4f
Author: Andreas Tille <tille at debian.org>
Date:   Mon Jan 2 19:29:13 2017 +0000

    Normalise packaging, point in d/copyright to alternative download location, citation
---
 debian/changelog         |  9 +--------
 debian/compat            |  2 +-
 debian/control           | 34 +++++++++++++++-------------------
 debian/copyright         |  2 +-
 debian/rules             | 12 +-----------
 debian/upstream/metadata | 11 +++++++++++
 6 files changed, 30 insertions(+), 40 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index 77f8677..89623ce 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,12 +1,5 @@
-emmax (0~beta.20100307-2) UNRELEASED; urgency=low
-
-  * Added example script to transform .ped files for emmax
-
- -- Steffen Moeller <moeller at debian.org>  Thu, 13 Jun 2013 10:47:43 +0200
-
 emmax (0~beta.20100307-1) UNRELEASED; urgency=low
 
   * Initial release pending, not uploaded because of unknown license.
-  * Created rough help2man-seeded man pages
 
- -- Steffen Moeller <moeller at debian.org>  Mon, 10 Jun 2013 13:26:24 +0200
+ -- Steffen Moeller <moeller at debian.org>  Thu, 13 Jun 2013 10:47:43 +0200
diff --git a/debian/compat b/debian/compat
index 45a4fb7..f599e28 100644
--- a/debian/compat
+++ b/debian/compat
@@ -1 +1 @@
-8
+10
diff --git a/debian/control b/debian/control
index ad638c1..6d87e52 100644
--- a/debian/control
+++ b/debian/control
@@ -1,17 +1,25 @@
 Source: emmax
-Section: science
-Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: SteffenSteffen Moeller <moeller at debian.org>
-Build-Depends: debhelper (>= 8.0.0), libatlas-dev, liblapack-dev, zlib1g-dev, libblas3, liblapack3, libatlas3-base, libatlas-base-dev
-Standards-Version: 3.9.4
+Section: science
+Priority: optional
+Build-Depends: debhelper (>= 10),
+               libatlas-dev,
+               liblapack-dev,
+               zlib1g-dev,
+               libblas3,
+               liblapack3,
+               libatlas3-base,
+               libatlas-base-dev
+Standards-Version: 3.9.8
+Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/emmax/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/emmax/trunk/
 Homepage: http://genome.sph.umich.edu/wiki/EMMAX
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/emmax/trunk/
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/emmax/trunk/
 
 Package: emmax
 Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}
+Depends: ${shlibs:Depends},
+         ${misc:Depends}
 Description: genetic mapping considering population structure
  EMMAX is a statistical test for large scale human or model organism
  association mapping accounting for the sample structure. In addition
@@ -20,15 +28,3 @@ Description: genetic mapping considering population structure
  complex traits, which allows to avoid repetitive variance component
  estimation procedure, resulting in a significant amount of increase in
  computational time of association mapping using mixed model.
-
-Package: emmax-dbg
-Architecture: any
-Section: debug
-Priority: extra
-Depends: emmax (= ${binary:Version}), ${misc:Depends}
-Description: debug information for emmax
- This package contains the dubgging symbols for emmax.
- In case of a reproducible crash, you may be asked by
- the developers to install this package and provide
- a better annotated backtrace.
- 
diff --git a/debian/copyright b/debian/copyright
index e00f70f..ecaaf1e 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -1,6 +1,6 @@
 Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: emmax
-Source: http://www.sph.umich.edu/csg/kang/emmax/download/index.html
+Source: http://genetics.cs.ucla.edu/emmax/
 
 Files: *
 Copyright: <years> <put author's name and email here>
diff --git a/debian/rules b/debian/rules
index 52c7a48..8fab848 100755
--- a/debian/rules
+++ b/debian/rules
@@ -1,19 +1,9 @@
 #!/usr/bin/make -f
-# -*- makefile -*-
-# Sample debian/rules that uses debhelper.
-# This file was originally written by Joey Hess and Craig Small.
-# As a special exception, when this file is copied by dh-make into a
-# dh-make output file, you may use that output file without restriction.
-# This special exception was added by Craig Small in version 0.37 of dh-make.
-
 # Uncomment this to turn on verbose mode.
 #export DH_VERBOSE=1
 
 %:
-	dh $@ --parallel
-
-override_dh_strip:
-	dh_strip --dbg-package=emmax-dbg
+	dh $@
 
 override_dh_install:
 	dh_install --sourcedir=.
diff --git a/debian/upstream/metadata b/debian/upstream/metadata
new file mode 100644
index 0000000..517d9af
--- /dev/null
+++ b/debian/upstream/metadata
@@ -0,0 +1,11 @@
+Reference:
+  Author: Hyun Min Kang and Jae Hoon Sul and Susan K Service and Noah A Zaitlen and Sit-yee Kong and Nelson B Freimer and Chiara Sabatti and Eleazar Eskin
+  Title: "Variance component model to account for sample structure in genome-wide association studies"
+  Journal: Nature Genetics
+  Year: 2010
+  Volume: 42
+  Number: 4
+  Pages: 348-54
+  DOI: 10.1038/ng.548
+  PMID: 20208533
+  URL: http://www.nature.com/ng/journal/v42/n4/full/ng.548.html

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/emmax.git