[med-svn] [cwltool] branch master updated (1c3b2ae -> 3204427)

[Andreas Tille]

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tille pushed a change to branch master
in repository cwltool.

      from  1c3b2ae   Standards-Version: 4.1.0, Close bug that should have been closed in previous upload
      adds  d827d3c   New upstream version 1.0.20171107133715
       new  9b0997d   Update upstream source from tag 'upstream/1.0.20171107133715'
       new  951d6a9   New upstream version
       new  c67e247   Drop unneeded ruamel.yaml version check
       new  4b7a13f   Standards-Version: 4.1.1
       new  3204427   Versioned Build-Depends: python-schema-salad (>= 2.6.20171201034858)

The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
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Summary of changes:
 MANIFEST.in                                        |   1 +
 PKG-INFO                                           | 135 +++++----
 README.rst                                         | 132 ++++++---
 cwltool.egg-info/PKG-INFO                          | 135 +++++----
 cwltool.egg-info/SOURCES.txt                       |  29 +-
 cwltool.egg-info/pbr.json                          |   1 -
 cwltool.egg-info/requires.txt                      |  16 +-
 cwltool/builder.py                                 |  12 +-
 cwltool/cwlNodeEngine.js                           |  14 +-
 cwltool/cwlNodeEngineJSConsole.js                  |  32 +++
 cwltool/cwlrdf.py                                  |   6 +-
 cwltool/draft2tool.py                              |  93 +++---
 cwltool/expression.py                              |  24 +-
 cwltool/job.py                                     | 191 ++++++++-----
 cwltool/load_tool.py                               |   5 +-
 cwltool/main.py                                    |  18 +-
 cwltool/mutation.py                                |   4 +
 cwltool/pathmapper.py                              |  21 +-
 cwltool/process.py                                 |  20 +-
 cwltool/sandboxjs.py                               |  71 +++--
 cwltool/schemas/draft-3/index.md                   |   0
 .../salad/schema_salad/metaschema/metaschema2.yml  | 317 ---------------------
 cwltool/workflow.py                                |   8 +-
 debian/changelog                                   |  11 +
 debian/control                                     |   6 +-
 debian/copyright                                   |   8 +-
 debian/patches/no_ruamel.yaml_version_check.patch  |  16 ++
 debian/patches/older-rdflib                        |  10 +-
 debian/patches/series                              |   1 +
 setup.cfg                                          |   3 +-
 setup.py                                           |   5 +-
 tests/cat.cwl                                      |   8 -
 tests/cat2.cwl                                     |   9 -
 tests/env.cwl                                      |   5 -
 tests/item1.yml                                    |   3 -
 tests/output.txt                                   |  16 --
 tests/test_examples.py                             |  61 ++++
 tests/test_rdfprint.py                             |  12 +
 tests/value                                        |   1 -
 tests/wf/4c637b77-8130-4158-807c-ccc78ea7b563      |   1 -
 tests/wf/c5b8320e-6e31-4bbb-8453-03b054b3254e      |   1 -
 tests/wf/conditional.cwl                           |  22 --
 tests/wf/emptyscatter.cwl                          |  18 --
 tests/wf/emptyscatter.yml                          |   1 -
 tests/wf/foo1.txt                                  |   1 -
 tests/wf/foo3.txt                                  |   1 -
 tests/wf/fooa.txt                                  |   1 -
 tests/wf/foob.txt                                  |   1 -
 tests/wf/foofoo5.txt.txt                           |   1 -
 tests/wf/js_output.cwl                             |   9 +
 tests/wf/js_output_workflow.cwl                    |  15 +
 tests/wf/loop.cwl                                  |  36 ---
 tests/wf/output.txt                                |  16 --
 tests/wf/revsort-ovr2-job.json                     |  15 -
 tests/wf/value                                     |   1 -
 tests/wf/whale.txt                                 |  16 --
 tests/writeable.cwl                                |  11 -
 57 files changed, 747 insertions(+), 880 deletions(-)
 delete mode 100644 cwltool.egg-info/pbr.json
 create mode 100644 cwltool/cwlNodeEngineJSConsole.js
 delete mode 100644 cwltool/schemas/draft-3/index.md
 delete mode 100644 cwltool/schemas/v1.0/salad/schema_salad/metaschema/metaschema2.yml
 create mode 100644 debian/patches/no_ruamel.yaml_version_check.patch
 delete mode 100644 tests/cat.cwl
 delete mode 100644 tests/cat2.cwl
 delete mode 100644 tests/env.cwl
 delete mode 100644 tests/item1.yml
 delete mode 100644 tests/output.txt
 create mode 100644 tests/test_rdfprint.py
 delete mode 100644 tests/value
 delete mode 100644 tests/wf/4c637b77-8130-4158-807c-ccc78ea7b563
 delete mode 100644 tests/wf/c5b8320e-6e31-4bbb-8453-03b054b3254e
 delete mode 100644 tests/wf/conditional.cwl
 delete mode 100644 tests/wf/emptyscatter.cwl
 delete mode 100644 tests/wf/emptyscatter.yml
 delete mode 100644 tests/wf/foo1.txt
 delete mode 100644 tests/wf/foo3.txt
 delete mode 100644 tests/wf/fooa.txt
 delete mode 100644 tests/wf/foob.txt
 delete mode 100644 tests/wf/foofoo5.txt.txt
 create mode 100644 tests/wf/js_output.cwl
 create mode 100644 tests/wf/js_output_workflow.cwl
 delete mode 100644 tests/wf/loop.cwl
 delete mode 100644 tests/wf/output.txt
 delete mode 100644 tests/wf/revsort-ovr2-job.json
 delete mode 100644 tests/wf/value
 delete mode 100644 tests/wf/whale.txt
 delete mode 100644 tests/writeable.cwl

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