[med-svn] [cwltool] branch upstream updated (29cb30f -> d827d3c)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch upstream
in repository cwltool.

      from  29cb30f   New upstream version 1.0.20170810192106
      adds  d827d3c   New upstream version 1.0.20171107133715

No new revisions were added by this update.

Summary of changes:
 MANIFEST.in                                        |   1 +
 PKG-INFO                                           | 135 +++++----
 README.rst                                         | 132 ++++++---
 cwltool.egg-info/PKG-INFO                          | 135 +++++----
 cwltool.egg-info/SOURCES.txt                       |  29 +-
 cwltool.egg-info/pbr.json                          |   1 -
 cwltool.egg-info/requires.txt                      |  16 +-
 cwltool/builder.py                                 |  12 +-
 cwltool/cwlNodeEngine.js                           |  14 +-
 cwltool/cwlNodeEngineJSConsole.js                  |  32 +++
 cwltool/cwlrdf.py                                  |   6 +-
 cwltool/draft2tool.py                              |  93 +++---
 cwltool/expression.py                              |  24 +-
 cwltool/job.py                                     | 191 ++++++++-----
 cwltool/load_tool.py                               |   5 +-
 cwltool/main.py                                    |  18 +-
 cwltool/mutation.py                                |   4 +
 cwltool/pathmapper.py                              |  21 +-
 cwltool/process.py                                 |  20 +-
 cwltool/sandboxjs.py                               |  71 +++--
 cwltool/schemas/draft-3/index.md                   |   0
 .../salad/schema_salad/metaschema/metaschema2.yml  | 317 ---------------------
 cwltool/workflow.py                                |   8 +-
 setup.cfg                                          |   3 +-
 setup.py                                           |   5 +-
 tests/cat.cwl                                      |   8 -
 tests/cat2.cwl                                     |   9 -
 tests/env.cwl                                      |   5 -
 tests/item1.yml                                    |   3 -
 tests/output.txt                                   |  16 --
 tests/test_examples.py                             |  61 ++++
 tests/test_rdfprint.py                             |  12 +
 tests/value                                        |   1 -
 tests/wf/4c637b77-8130-4158-807c-ccc78ea7b563      |   1 -
 tests/wf/c5b8320e-6e31-4bbb-8453-03b054b3254e      |   1 -
 tests/wf/conditional.cwl                           |  22 --
 tests/wf/emptyscatter.cwl                          |  18 --
 tests/wf/emptyscatter.yml                          |   1 -
 tests/wf/foo1.txt                                  |   1 -
 tests/wf/foo3.txt                                  |   1 -
 tests/wf/fooa.txt                                  |   1 -
 tests/wf/foob.txt                                  |   1 -
 tests/wf/foofoo5.txt.txt                           |   1 -
 tests/wf/js_output.cwl                             |   9 +
 tests/wf/js_output_workflow.cwl                    |  15 +
 tests/wf/loop.cwl                                  |  36 ---
 tests/wf/output.txt                                |  16 --
 tests/wf/revsort-ovr2-job.json                     |  15 -
 tests/wf/value                                     |   1 -
 tests/wf/whale.txt                                 |  16 --
 tests/writeable.cwl                                |  11 -
 51 files changed, 707 insertions(+), 868 deletions(-)
 delete mode 100644 cwltool.egg-info/pbr.json
 create mode 100644 cwltool/cwlNodeEngineJSConsole.js
 delete mode 100644 cwltool/schemas/draft-3/index.md
 delete mode 100644 cwltool/schemas/v1.0/salad/schema_salad/metaschema/metaschema2.yml
 delete mode 100644 tests/cat.cwl
 delete mode 100644 tests/cat2.cwl
 delete mode 100644 tests/env.cwl
 delete mode 100644 tests/item1.yml
 delete mode 100644 tests/output.txt
 create mode 100644 tests/test_rdfprint.py
 delete mode 100644 tests/value
 delete mode 100644 tests/wf/4c637b77-8130-4158-807c-ccc78ea7b563
 delete mode 100644 tests/wf/c5b8320e-6e31-4bbb-8453-03b054b3254e
 delete mode 100644 tests/wf/conditional.cwl
 delete mode 100644 tests/wf/emptyscatter.cwl
 delete mode 100644 tests/wf/emptyscatter.yml
 delete mode 100644 tests/wf/foo1.txt
 delete mode 100644 tests/wf/foo3.txt
 delete mode 100644 tests/wf/fooa.txt
 delete mode 100644 tests/wf/foob.txt
 delete mode 100644 tests/wf/foofoo5.txt.txt
 create mode 100644 tests/wf/js_output.cwl
 create mode 100644 tests/wf/js_output_workflow.cwl
 delete mode 100644 tests/wf/loop.cwl
 delete mode 100644 tests/wf/output.txt
 delete mode 100644 tests/wf/revsort-ovr2-job.json
 delete mode 100644 tests/wf/value
 delete mode 100644 tests/wf/whale.txt
 delete mode 100644 tests/writeable.cwl

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