[med-svn] [snakemake] 02/05: Patch out a test case whose dependencies are not present in Debian

[chrysn]

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chrysn-guest pushed a commit to branch master
in repository snakemake.

commit 894281112b636bbcbd9b24d106e350f355d1acbd
Author: chrysn <chrysn at fsfe.org>
Date:   Mon Dec 11 14:54:45 2017 +0100

    Patch out a test case whose dependencies are not present in Debian
---
 .../0009-skip-test-without-google-cloud-sdk.patch  | 35 ++++++++++++++++++++++
 debian/patches/series                              |  1 +
 2 files changed, 36 insertions(+)

diff --git a/debian/patches/0009-skip-test-without-google-cloud-sdk.patch b/debian/patches/0009-skip-test-without-google-cloud-sdk.patch
new file mode 100644
index 0000000..dc7b28c
--- /dev/null
+++ b/debian/patches/0009-skip-test-without-google-cloud-sdk.patch
@@ -0,0 +1,35 @@
+--- a/tests/test_remote_gs/Snakefile
++++ b/tests/test_remote_gs/Snakefile
+@@ -1,15 +1,19 @@
+-from snakemake.remote import GS
+-import google.auth
+ try:
+-    GS = GS.RemoteProvider()
++    from snakemake.remote import GS
++except WorkflowError:
++    print("skipping test_remote_gs: The Python 3 package 'google-cloud-sdk' needs to be installed to use GS remote() file functionality. No module named 'google.cloud'")
++else:
++    import google.auth
++    try:
++        GS = GS.RemoteProvider()
+ 
+-    rule copy:
+-        input:
+-            GS.remote("gcp-public-data-landsat/LC08/01/001/003/LC08_L1GT_001003_20170430_20170501_01_RT/LC08_L1GT_001003_20170430_20170501_01_RT_MTL.txt")
+-        output:
+-            "landsat-data.txt"
+-        shell:
+-            "cp {input} {output}"
+-except google.auth.exceptions.DefaultCredentialsError:
+-    # ignore the test if not authenticated
+-    print("skipping test_remote_gs because we are not authenticated with gcloud")
++        rule copy:
++            input:
++                GS.remote("gcp-public-data-landsat/LC08/01/001/003/LC08_L1GT_001003_20170430_20170501_01_RT/LC08_L1GT_001003_20170430_20170501_01_RT_MTL.txt")
++            output:
++                "landsat-data.txt"
++            shell:
++                "cp {input} {output}"
++    except google.auth.exceptions.DefaultCredentialsError:
++        # ignore the test if not authenticated
++        print("skipping test_remote_gs because we are not authenticated with gcloud")
diff --git a/debian/patches/series b/debian/patches/series
index ea2dca2..186b8ab 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -6,3 +6,4 @@
 0006-restore-bin.patch
 # 0007-noop-rate-limiter.patch - broken and obsolete with https://bugs.debian.org/880661
 0008-remove_sphinx.ext.patch
+0009-skip-test-without-google-cloud-sdk.patch

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