[med-svn] [ngila] 11/13: Update upstream source from tag 'upstream/1.3'

[Andreas Tille]

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tille pushed a commit to branch master
in repository ngila.

commit cc0583abeb4399a4fa9d087b4bef4b142bb07e61
Merge: 8f1300b b98b402
Author: Andreas Tille <tille at debian.org>
Date:   Wed Dec 13 16:41:19 2017 +0100

    Update upstream source from tag 'upstream/1.3'
    
    Update to upstream version '1.3'
    with Debian dir 03a5d31e88771960d8129a6edc2ab21d1cd59d94

 CMakeLists.txt           | 218 +++++++++++
 ChangeLog                |  48 +++
 Modules/FindGSL.cmake    | 175 +++++++++
 Modules/NSIS.template.in | 927 +++++++++++++++++++++++++++++++++++++++++++++++
 copying.txt              | 675 ++++++++++++++++++++++++++++++++++
 doc/CMakeLists.txt       |   0
 doc/mkman.pl             |  41 +++
 matrix/CMakeLists.txt    |   0
 matrix/dna               |   5 +
 ngilarc.txt              |   4 +
 readme.txt               |  89 +++++
 releng/build-rel-osx.sh  |  55 +++
 releng/build-rel-unix.sh |  45 +++
 releng/build-rel-win.bat |  52 +++
 src/CMakeLists.txt       | 115 ++++++
 src/align.cpp            | 596 ++++++++++++++++++++++++++++++
 src/align.h              | 235 ++++++++++++
 src/config.h.cmake       |  10 +
 src/lgmod.incl           | 110 ++++++
 src/matparser.cpp        | 117 ++++++
 src/matparser.h          |  92 +++++
 src/models.cpp           | 442 ++++++++++++++++++++++
 src/models.h             | 116 ++++++
 src/ngila-256.png        | Bin 0 -> 34352 bytes
 src/ngila-256.psd        | Bin 0 -> 255054 bytes
 src/ngila.cmds           |  69 ++++
 src/ngila.cpp            | 437 ++++++++++++++++++++++
 src/ngila.desktop        |  13 +
 src/ngila.h              |  73 ++++
 src/ngila.ico            | Bin 0 -> 302430 bytes
 src/ngila.png            | Bin 0 -> 4425 bytes
 src/ngila.rc             |   1 +
 src/ngila_app.h          | 111 ++++++
 src/seqdb.cpp            | 147 ++++++++
 src/seqdb.h              | 190 ++++++++++
 src/seqparser.h          | 150 ++++++++
 src/sort.h               | 152 ++++++++
 src/xm.h                 |  76 ++++
 tests/CMakeLists.txt     |   0
 tests/test1.aln          |  36 ++
 tests/test1.fsa          |  22 ++
 tests/test1.sh           |  10 +
 tools/aamodel.R          |  25 ++
 tools/lg_LG.PAML.txt     |  22 ++
 tools/logzeta.R          |  30 ++
 45 files changed, 5731 insertions(+)

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