[med-svn] [ngsqctoolkit] 01/08: Inject some rough packaging stuff for ngsqctoolkit (does not yet build a package - license needs to be clarified first)

[Andreas Tille]

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tille pushed a commit to branch master
in repository ngsqctoolkit.

commit 8f16b431aa26696be997133edd8a4da6a9eb2cee
Author: Andreas Tille <tille at debian.org>
Date:   Thu Aug 7 10:58:22 2014 +0000

    Inject some rough packaging stuff for ngsqctoolkit (does not yet build a package - license needs to be clarified first)
---
 debian/changelog         |  5 +++++
 debian/compat            |  1 +
 debian/control           | 22 ++++++++++++++++++++++
 debian/copyright         | 12 ++++++++++++
 debian/rules             | 23 +++++++++++++++++++++++
 debian/source/format     |  1 +
 debian/upstream/metadata | 12 ++++++++++++
 debian/watch             |  3 +++
 8 files changed, 79 insertions(+)

diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..db62c16
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+ngsqctoolkit (2.3.3-1) UNRELEASED; urgency=low
+
+  * Initial release (Closes: #<bug>)
+
+ -- DMPT <debian-med-packaging at lists.alioth.debian.org>  Thu, 24 May 2012 14:30:13 +0200
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..44f2f8d
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,22 @@
+Source: ngsqctoolkit
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 9)
+Standards-Version: 3.9.5
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/ngsqctoolkit/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/ngsqctoolkit/trunk/
+Homepage: http://59.163.192.90:8080/ngsqctoolkit/
+
+Package: ngsqctoolkit
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: toolkit for the quality control of next generation sequencing data
+ NGS QC Toolkit: A toolkit for the quality control (QC) of next
+ generation sequencing (NGS) data. The toolkit comprises of user-friendly
+ stand alone tools for quality control of the sequence data generated
+ using Illumina and Roche 454 platforms with detailed results in the form
+ of tables and graphs, and filtering of high-quality sequence data. It
+ also includes few other tools, which are helpful in NGS data quality
+ control and analysis. 
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..cb158be
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,12 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: NGS QC Toolkit
+Upstream-Contact: Mukesh Jain <mjain at nipgr.ac.in> (mjainanid at gmail.com)
+Source: http://59.163.192.90:8080/ngsqctoolkit/
+
+Files: *
+Copyright: © 2010-2014 Mukesh Jain
+License: to_be_clarified
+
+Files: debian/*
+Copyright: © 2014 maintainername <maintainer at e.mail>
+License: <license>
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..58ec00b
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,23 @@
+#!/usr/bin/make -f
+
+# DH_VERBOSE := 1
+
+# some helpful variables - uncomment them if needed
+# shamelessly stolen from http://jmtd.net/log/awk/
+#DEBVERS        := $(shell dpkg-parsechangelog | awk '/^Version:/ {print $$2}')
+#VERSION        := $(shell echo '$(DEBVERS)' | sed -e 's/^[0-9]*://' -e 's/-.*//')
+#DEBFLAVOR      := $(shell dpkg-parsechangelog | awk '/^Distribution:/ {print $$2}')
+#DEBPKGNAME     := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
+#DEBIAN_BRANCH  := $(shell awk 'BEGIN{FS="[= ]+"} /debian-branch/ {print $$2}' debian/gbp.conf)
+#GIT_TAG        := $(subst ~,_,$(VERSION))
+
+# alternatively to manually set those variables you can
+#  include /usr/share/cdbs/1/rules/buildvars.mk
+# and use what is set there.  Any hint whether dh might set variables in
+# a similar manner are welcome.
+
+%:
+	dh $@
+
+#get-orig-source:
+#	. debian/get-orig-source
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/upstream/metadata b/debian/upstream/metadata
new file mode 100644
index 0000000..684d8ff
--- /dev/null
+++ b/debian/upstream/metadata
@@ -0,0 +1,12 @@
+Reference:
+  Author: Ravi K. Patel and Mukesh Jain
+  Title: "NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data"
+  Journal: PLoS One
+  Year: 2012
+  Volume: 7
+  Number: 2
+  Pages: e30619
+  DOI: 10.1371/journal.pone.0030619
+  PMID: 22312429
+  URL: http://www.plosone.org/article/info:doi/10.1371/journal.pone.0030619
+  eprint: http://www.plosone.org/article/fetchObject.action?uri=info%3Adoi%2F10.1371%2Fjournal.pone.0030619&representation=PDF
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..2369216
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,3 @@
+version=3
+
+http://59.163.192.90:8080/ngsqctoolkit/ .*download.pl\?toolkit=NGSQCToolkit_v([\d.]+)\.zip

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