[med-svn] [gatb-core] 03/03: Fix some spelling issues

[Andreas Tille]

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tille pushed a commit to branch master
in repository gatb-core.

commit e8e7b72dda8f873cdb9912eb9c902cf82ee9c781
Author: Andreas Tille <tille at debian.org>
Date:   Thu Dec 14 09:37:51 2017 +0100

    Fix some spelling issues
---
 debian/patches/series         |  1 +
 debian/patches/spelling.patch | 62 +++++++++++++++++++++++++++++++++++++++++++
 2 files changed, 63 insertions(+)

diff --git a/debian/patches/series b/debian/patches/series
index 63565fd..20a2787 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -5,3 +5,4 @@ fix_install_location.patch
 set_soversion.patch
 dynamic_linking_of_tools.patch
 multiarch.patch
+spelling.patch
diff --git a/debian/patches/spelling.patch b/debian/patches/spelling.patch
new file mode 100644
index 0000000..b76eee3
--- /dev/null
+++ b/debian/patches/spelling.patch
@@ -0,0 +1,62 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Tue, 28 Nov 2017 10:37:22 +0100
+Description: Fix spelling issues
+
+--- a/gatb-core/src/gatb/tools/compression/DnaCoder.cpp
++++ b/gatb-core/src/gatb/tools/compression/DnaCoder.cpp
+@@ -647,7 +647,7 @@ void DnaEncoder::encodeAnchorRead(int an
+ 		//CompressionUtils::encodeNumeric(_rangeEncoder, _isPrevReadAnchorablePosModel, _isPrevReadAnchorablePos);
+ 		//}
+ 	//_prevAnchorAddress = anchorAddress;
+-	//printf("anchor adress %i \n",anchorAddress);
++	//printf("anchor address %i \n",anchorAddress);
+ 
+ 	
+ 	kmer_type anchor = _kmers[anchorPos];
+@@ -1491,7 +1491,7 @@ void DnaDecoder::decodeAnchorRead(){
+ 	#ifdef PRINT_DEBUG_DECODER
+ 		cout << "\t\t\tRead size: " << _readSize << endl;
+ 		cout << "\t\t\tAnchor pos: " << anchorPos << endl;
+-		cout << "\t\t\tAnchor adress: " << anchorAddress << endl;
++		cout << "\t\t\tAnchor address: " << anchorAddress << endl;
+ 		cout << "\t\t\tAnchor: " << anchor.toString(_kmerSize) << endl;
+ 	#endif
+ 	
+--- a/gatb-core/src/gatb/tools/compression/Leon.cpp
++++ b/gatb-core/src/gatb/tools/compression/Leon.cpp
+@@ -996,7 +996,7 @@ void Leon::endDnaCompression(){
+ 
+   u_int64_t readsSize = _anchorAdressSize+_anchorPosSize+_readSizeSize+_bifurcationSize+_otherSize;
+   getInfo()->add(2, "Reads", "%.2f (%u)", ((readsSize*100) / (double)_compressedSize), readsSize);
+-  getInfo()->add(3, "Anchor adress", "%.2f (%u)", ((_anchorAdressSize*100) / (double)_compressedSize), _anchorAdressSize);
++  getInfo()->add(3, "Anchor address", "%.2f (%u)", ((_anchorAdressSize*100) / (double)_compressedSize), _anchorAdressSize);
+   getInfo()->add(3, "Anchor pos", "%.2f (%u)", ((_anchorPosSize*100) / (double)_compressedSize), _anchorPosSize);
+   getInfo()->add(3, "Read size", "%.2f (%u)", ((_readSizeSize*100) / (double)_compressedSize), _readSizeSize);
+   getInfo()->add(3, "Bifurcation", "%.2f (%u)", ((_bifurcationSize*100) / (double)_compressedSize), _bifurcationSize);
+--- a/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp
++++ b/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp
+@@ -1276,13 +1276,13 @@ unsigned char GraphUnitigsTemplate<span>
+ template<size_t span>
+ void GraphUnitigsTemplate<span>::countNeighbors (const NodeGU &source, size_t &in, size_t &out)  const
+ {
+-    std::cout << "GraphU countNeighbors source,in,out not implememented" << std::endl;exit(1);
++    std::cout << "GraphU countNeighbors source,in,out not implemented" << std::endl;exit(1);
+ }
+ 
+ template<size_t span>
+ NodeGU GraphUnitigsTemplate<span>::getNode (const NodeGU& source, Direction dir, kmer::Nucleotide nt, bool& exists) const
+ {
+-    std::cout << "GraphU getNode source,dir,nt,exists  not implememented" << std::endl;exit(1);
++    std::cout << "GraphU getNode source,dir,nt,exists  not implemented" << std::endl;exit(1);
+     return NodeGU();
+ }
+ 
+@@ -1899,7 +1899,7 @@ debugBuildNode(string startKmer) const
+             }
+         }
+     }
+-    std::cout << "could not build node correspoding to kmer" << startKmer << ", it's not an unitig end." << std::endl;
++    std::cout << "could not build node corresponding to kmer" << startKmer << ", it's not an unitig end." << std::endl;
+     exit(1);
+ }
+ 

-- 
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