[med-svn] [libjung-java] branch master updated (5f83bd7 -> 5ab28f9)
Andreas Tille
tille at debian.org
Thu Dec 14 17:31:40 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch master
in repository libjung-java.
from 5f83bd7 More complete citation information
new 9efed71 New upstream version
adds 286ff02 Imported Upstream version 2.0.1+dfsg
adds 5fe93a4 Imported Upstream version 2.0.1+dfsg
new 5fa88fc New upstream version 2.1.1
new f0522c9 Update upstream source from tag 'upstream/2.1.1'
new c818273 Adapt URLs, Upstream does not include any JAI code more so nothing to remove in Files-Excluded
new 11a69c6 debhelper 10
new 887ed59 Standards-Version: 4.1.2
new 13025e0 cme fix dpkg-control
new 5ab28f9 Bump upstream version number
The 8 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.gitignore | 25 +
.travis.yml | 35 +
AUTHORS | 19 +
CONTRIBUTING.md | 35 +
LICENSE | 41 +
README.md | 52 +
RELEASE.md | 229 ++++
debian/changelog | 13 +
debian/compat | 2 +-
debian/control | 8 +-
debian/copyright | 10 +-
debian/rules | 2 +-
debian/watch | 6 +-
jung-algorithms-2.0.1-sources.jar | Bin 208091 -> 0 bytes
jung-algorithms/assembly.xml | 19 +
jung-algorithms/pom.xml | 32 +
.../blockmodel/StructurallyEquivalent.java | 174 +++
.../algorithms/blockmodel/VertexPartition.java | 131 +++
.../ics/jung/algorithms/blockmodel/package.html | 32 +
.../algorithms/cluster/BicomponentClusterer.java | 165 +++
.../cluster/EdgeBetweennessClusterer.java | 109 ++
.../jung/algorithms/cluster/VoltageClusterer.java | 370 ++++++
.../algorithms/cluster/WeakComponentClusterer.java | 73 ++
.../uci/ics/jung/algorithms/cluster/package.html | 34 +
.../algorithms/filters/EdgePredicateFilter.java | 70 ++
.../uci/ics/jung/algorithms/filters/Filter.java | 26 +
.../ics/jung/algorithms/filters/FilterUtils.java | 100 ++
.../algorithms/filters/KNeighborhoodFilter.java | 142 +++
.../algorithms/filters/VertexPredicateFilter.java | 75 ++
.../uci/ics/jung/algorithms/filters/package.html | 30 +
.../jung/algorithms/flows/EdmondsKarpMaxFlow.java | 314 +++++
.../edu/uci/ics/jung/algorithms/flows/package.html | 19 +
.../generators/EvolvingGraphGenerator.java | 31 +
.../jung/algorithms/generators/GraphGenerator.java | 21 +
.../algorithms/generators/Lattice2DGenerator.java | 196 ++++
.../ics/jung/algorithms/generators/package.html | 19 +
.../generators/random/BarabasiAlbertGenerator.java | 293 +++++
.../random/EppsteinPowerLawGenerator.java | 128 +++
.../generators/random/ErdosRenyiGenerator.java | 105 ++
.../random/KleinbergSmallWorldGenerator.java | 192 ++++
.../random/MixedRandomGraphGenerator.java | 80 ++
.../jung/algorithms/generators/random/package.html | 27 +
.../jung/algorithms/importance/AbstractRanker.java | 392 +++++++
.../importance/BetweennessCentrality.java | 189 +++
.../jung/algorithms/importance/KStepMarkov.java | 135 +++
.../ics/jung/algorithms/importance/Ranking.java | 79 ++
.../importance/RelativeAuthorityRanker.java | 73 ++
.../algorithms/importance/WeightedNIPaths.java | 196 ++++
.../ics/jung/algorithms/layout/AbstractLayout.java | 292 +++++
.../jung/algorithms/layout/AggregateLayout.java | 250 ++++
.../ics/jung/algorithms/layout/BalloonLayout.java | 145 +++
.../ics/jung/algorithms/layout/CircleLayout.java | 148 +++
.../uci/ics/jung/algorithms/layout/DAGLayout.java | 340 ++++++
.../uci/ics/jung/algorithms/layout/FRLayout.java | 318 ++++++
.../uci/ics/jung/algorithms/layout/FRLayout2.java | 317 ++++++
.../algorithms/layout/GraphElementAccessor.java | 49 +
.../uci/ics/jung/algorithms/layout/ISOMLayout.java | 225 ++++
.../uci/ics/jung/algorithms/layout/KKLayout.java | 417 +++++++
.../edu/uci/ics/jung/algorithms/layout/Layout.java | 87 ++
.../jung/algorithms/layout/LayoutDecorator.java | 107 ++
.../uci/ics/jung/algorithms/layout/PolarPoint.java | 106 ++
.../jung/algorithms/layout/RadialTreeLayout.java | 116 ++
.../layout/RadiusGraphElementAccessor.java | 192 ++++
.../ics/jung/algorithms/layout/SpringLayout.java | 330 ++++++
.../ics/jung/algorithms/layout/SpringLayout2.java | 139 +++
.../ics/jung/algorithms/layout/StaticLayout.java | 49 +
.../uci/ics/jung/algorithms/layout/TreeLayout.java | 252 ++++
.../uci/ics/jung/algorithms/layout/package.html | 39 +
.../layout/util/RandomLocationTransformer.java | 62 +
.../ics/jung/algorithms/layout/util/Relaxer.java | 43 +
.../ics/jung/algorithms/layout/util/VisRunner.java | 146 +++
.../ics/jung/algorithms/layout/util/package.html | 20 +
.../uci/ics/jung/algorithms/metrics/Metrics.java | 74 ++
.../jung/algorithms/metrics/StructuralHoles.java | 343 ++++++
.../ics/jung/algorithms/metrics/TriadicCensus.java | 209 ++++
.../uci/ics/jung/algorithms/metrics/package.html | 26 +
.../java/edu/uci/ics/jung/algorithms/package.html | 42 +
.../scoring/AbstractIterativeScorer.java | 370 ++++++
.../scoring/AbstractIterativeScorerWithPriors.java | 117 ++
.../jung/algorithms/scoring/BarycenterScorer.java | 55 +
.../algorithms/scoring/BetweennessCentrality.java | 350 ++++++
.../algorithms/scoring/ClosenessCentrality.java | 55 +
.../ics/jung/algorithms/scoring/DegreeScorer.java | 45 +
.../scoring/DistanceCentralityScorer.java | 249 ++++
.../ics/jung/algorithms/scoring/EdgeScorer.java | 28 +
.../algorithms/scoring/EigenvectorCentrality.java | 52 +
.../edu/uci/ics/jung/algorithms/scoring/HITS.java | 147 +++
.../jung/algorithms/scoring/HITSWithPriors.java | 199 ++++
.../ics/jung/algorithms/scoring/KStepMarkov.java | 157 +++
.../uci/ics/jung/algorithms/scoring/PageRank.java | 70 ++
.../algorithms/scoring/PageRankWithPriors.java | 142 +++
.../ics/jung/algorithms/scoring/VertexScorer.java | 28 +
.../ics/jung/algorithms/scoring/VoltageScorer.java | 250 ++++
.../uci/ics/jung/algorithms/scoring/package.html | 42 +
.../scoring/util/DelegateToEdgeTransformer.java | 48 +
.../jung/algorithms/scoring/util/ScoringUtils.java | 72 ++
.../scoring/util/UniformDegreeWeight.java | 55 +
.../jung/algorithms/scoring/util/UniformInOut.java | 53 +
.../ics/jung/algorithms/scoring/util/VEPair.java | 56 +
.../scoring/util/VertexScoreTransformer.java | 46 +
.../ics/jung/algorithms/scoring/util/package.html | 34 +
.../shortestpath/BFSDistanceLabeler.java | 170 +++
.../algorithms/shortestpath/DijkstraDistance.java | 545 +++++++++
.../shortestpath/DijkstraShortestPath.java | 297 +++++
.../ics/jung/algorithms/shortestpath/Distance.java | 46 +
.../shortestpath/DistanceStatistics.java | 165 +++
.../shortestpath/MinimumSpanningForest.java | 163 +++
.../shortestpath/MinimumSpanningForest2.java | 106 ++
.../shortestpath/PrimMinimumSpanningTree.java | 118 ++
.../jung/algorithms/shortestpath/ShortestPath.java | 31 +
.../algorithms/shortestpath/ShortestPathUtils.java | 62 +
.../shortestpath/UnweightedShortestPath.java | 152 +++
.../ics/jung/algorithms/shortestpath/package.html | 30 +
.../transformation/DirectionTransformer.java | 125 ++
.../transformation/FoldingTransformer.java | 325 ++++++
.../transformation/VertexPartitionCollapser.java | 103 ++
.../jung/algorithms/transformation/package.html | 28 +
.../ics/jung/algorithms/util/BasicMapEntry.java | 81 ++
.../jung/algorithms/util/DiscreteDistribution.java | 219 ++++
.../edu/uci/ics/jung/algorithms/util/Indexer.java | 56 +
.../ics/jung/algorithms/util/IterativeContext.java | 28 +
.../ics/jung/algorithms/util/IterativeProcess.java | 174 +++
.../ics/jung/algorithms/util/KMeansClusterer.java | 257 +++++
.../ics/jung/algorithms/util/MapBinaryHeap.java | 379 +++++++
.../algorithms/util/MapSettableTransformer.java | 45 +
.../algorithms/util/SelfLoopEdgePredicate.java | 23 +
.../jung/algorithms/util/SettableTransformer.java | 31 +
.../ics/jung/algorithms/util/WeightedChoice.java | 203 ++++
.../edu/uci/ics/jung/algorithms/util/package.html | 31 +
jung-algorithms/src/site/site.xml | 14 +
.../cluster/TestBicomponentClusterer.java | 268 +++++
.../cluster/TestEdgeBetweennessClusterer.java | 83 ++
.../cluster/WeakComponentClustererTest.java | 19 +
.../filters/impl/TestKNeighborhoodFilter.java | 62 +
.../algorithms/flows/TestEdmondsKarpMaxFlow.java | 211 ++++
.../jung/algorithms/generators/TestLattice2D.java | 87 ++
.../generators/random/TestBarabasiAlbert.java | 254 +++++
.../random/TestEppsteinPowerLawGenerator.java | 106 ++
.../generators/random/TestErdosRenyi.java | 71 ++
.../generators/random/TestKleinberg.java | 39 +
.../importance/TestBetweennessCentrality.java | 119 ++
.../algorithms/importance/TestKStepMarkov.java | 86 ++
.../algorithms/importance/TestWeightedNIPaths.java | 85 ++
.../ics/jung/algorithms/layout/FRLayout2Test.java | 31 +
.../ics/jung/algorithms/layout/FRLayoutTest.java | 31 +
.../uci/ics/jung/algorithms/metrics/TestTriad.java | 166 +++
.../scoring/TestBetweennessCentrality.java | 138 +++
.../uci/ics/jung/algorithms/scoring/TestHITS.java | 119 ++
.../algorithms/scoring/TestHITSWithPriors.java | 77 ++
.../jung/algorithms/scoring/TestKStepMarkov.java | 70 ++
.../ics/jung/algorithms/scoring/TestPageRank.java | 80 ++
.../algorithms/scoring/TestPageRankWithPriors.java | 91 ++
.../jung/algorithms/scoring/TestVoltageScore.java | 79 ++
.../shortestpath/TestBFSDistanceLabeler.java | 67 ++
.../shortestpath/TestPrimMinimumSpanningTree.java | 62 +
.../algorithms/shortestpath/TestShortestPath.java | 528 +++++++++
.../shortestpath/TestUnweightedShortestPath.java | 95 ++
.../uci/ics/jung/algorithms/util/NotRandom.java | 60 +
.../jung/algorithms/util/TestWeightedChoice.java | 78 ++
jung-api-2.0.1-sources.jar | Bin 32291 -> 0 bytes
jung-api/assembly.xml | 19 +
jung-api/pom.xml | 40 +
.../java/edu/uci/ics/jung/graph/DirectedGraph.java | 24 +
.../main/java/edu/uci/ics/jung/graph/Forest.java | 96 ++
.../main/java/edu/uci/ics/jung/graph/Graph.java | 247 ++++
.../edu/uci/ics/jung/graph/GraphDecorator.java | 332 ++++++
.../java/edu/uci/ics/jung/graph/Hypergraph.java | 442 ++++++++
.../java/edu/uci/ics/jung/graph/KPartiteGraph.java | 40 +
.../java/edu/uci/ics/jung/graph/MultiGraph.java | 20 +
.../edu/uci/ics/jung/graph/ObservableGraph.java | 142 +++
.../src/main/java/edu/uci/ics/jung/graph/Tree.java | 52 +
.../edu/uci/ics/jung/graph/UndirectedGraph.java | 18 +
.../edu/uci/ics/jung/graph/event/GraphEvent.java | 117 ++
.../ics/jung/graph/event/GraphEventListener.java | 18 +
.../java/edu/uci/ics/jung/graph/event/package.html | 19 +
.../main/java/edu/uci/ics/jung/graph/package.html | 53 +
.../java/edu/uci/ics/jung/graph/util/Context.java | 50 +
.../util/DefaultParallelEdgeIndexFunction.java | 148 +++
.../uci/ics/jung/graph/util/EdgeIndexFunction.java | 54 +
.../java/edu/uci/ics/jung/graph/util/EdgeType.java | 22 +
.../java/edu/uci/ics/jung/graph/util/Graphs.java | 989 ++++++++++++++++
.../jung/graph/util/IncidentEdgeIndexFunction.java | 118 ++
.../java/edu/uci/ics/jung/graph/util/Pair.java | 249 ++++
.../edu/uci/ics/jung/graph/util/TreeUtils.java | 120 ++
.../java/edu/uci/ics/jung/graph/util/package.html | 28 +
jung-api/src/site/site.xml | 14 +
.../AbstractDirectedSparseMultigraphTest.java | 131 +++
.../uci/ics/jung/graph/AbstractHypergraphTest.java | 172 +++
.../graph/AbstractOrderedSparseMultigraphTest.java | 162 +++
.../graph/AbstractSortedSparseMultigraphTest.java | 164 +++
.../jung/graph/AbstractSparseMultigraphTest.java | 160 +++
.../uci/ics/jung/graph/AbstractSparseTreeTest.java | 104 ++
.../uci/ics/jung/graph/AbstractTreeUtilsTest.java | 43 +
.../AbstractUndirectedSparseMultigraphTest.java | 124 ++
.../java/edu/uci/ics/jung/graph/util/PairTest.java | 118 ++
jung-graph-impl-2.0.1-sources.jar | Bin 37106 -> 0 bytes
jung-graph-impl/assembly.xml | 19 +
jung-graph-impl/pom.xml | 32 +
.../java/edu/uci/ics/jung/graph/AbstractGraph.java | 244 ++++
.../edu/uci/ics/jung/graph/AbstractTypedGraph.java | 97 ++
.../edu/uci/ics/jung/graph/DelegateForest.java | 339 ++++++
.../java/edu/uci/ics/jung/graph/DelegateTree.java | 361 ++++++
.../graph/DirectedOrderedSparseMultigraph.java | 113 ++
.../uci/ics/jung/graph/DirectedSparseGraph.java | 289 +++++
.../ics/jung/graph/DirectedSparseMultigraph.java | 262 +++++
.../edu/uci/ics/jung/graph/OrderedKAryTree.java | 807 +++++++++++++
.../ics/jung/graph/OrderedSparseMultigraph.java | 129 +++
.../java/edu/uci/ics/jung/graph/SetHypergraph.java | 344 ++++++
.../uci/ics/jung/graph/SortedSparseMultigraph.java | 128 +++
.../java/edu/uci/ics/jung/graph/SparseGraph.java | 373 ++++++
.../edu/uci/ics/jung/graph/SparseMultigraph.java | 320 ++++++
.../graph/UndirectedOrderedSparseMultigraph.java | 88 ++
.../uci/ics/jung/graph/UndirectedSparseGraph.java | 243 ++++
.../ics/jung/graph/UndirectedSparseMultigraph.java | 249 ++++
.../edu/uci/ics/jung/graph/util/TestGraphs.java | 248 ++++
jung-graph-impl/src/site/site.xml | 14 +
.../jung/graph/DirectedSparseMultigraphTest.java | 20 +
.../edu/uci/ics/jung/graph/HypergraphTest.java | 55 +
.../jung/graph/OrderedSparseMultigraphTest.java | 49 +
.../ics/jung/graph/SortedSparseMultigraphTest.java | 57 +
.../graph/SparseGraphAddRemoveAddEdgeTest.java | 25 +
.../uci/ics/jung/graph/SparseMultigraphTest.java | 49 +
.../edu/uci/ics/jung/graph/SparseTreeTest.java | 21 +
.../java/edu/uci/ics/jung/graph/TreeUtilsTest.java | 23 +
.../jung/graph/UndirectedSparseMultigraphTest.java | 18 +
jung-io-2.0.1-sources.jar | Bin 56342 -> 0 bytes
jung-io/pom.xml | 36 +
.../main/java/edu/uci/ics/jung/io/GraphFile.java | 40 +
.../java/edu/uci/ics/jung/io/GraphIOException.java | 55 +
.../java/edu/uci/ics/jung/io/GraphMLMetadata.java | 53 +
.../java/edu/uci/ics/jung/io/GraphMLReader.java | 831 ++++++++++++++
.../java/edu/uci/ics/jung/io/GraphMLWriter.java | 440 +++++++
.../main/java/edu/uci/ics/jung/io/GraphReader.java | 45 +
.../java/edu/uci/ics/jung/io/PajekNetReader.java | 532 +++++++++
.../java/edu/uci/ics/jung/io/PajekNetWriter.java | 220 ++++
.../uci/ics/jung/io/graphml/AbstractMetadata.java | 40 +
.../edu/uci/ics/jung/io/graphml/DataMetadata.java | 41 +
.../edu/uci/ics/jung/io/graphml/EdgeMetadata.java | 114 ++
.../uci/ics/jung/io/graphml/EndpointMetadata.java | 68 ++
.../ics/jung/io/graphml/ExceptionConverter.java | 54 +
.../uci/ics/jung/io/graphml/GraphMLConstants.java | 48 +
.../uci/ics/jung/io/graphml/GraphMLDocument.java | 36 +
.../uci/ics/jung/io/graphml/GraphMLReader2.java | 368 ++++++
.../edu/uci/ics/jung/io/graphml/GraphMetadata.java | 164 +++
.../uci/ics/jung/io/graphml/HyperEdgeMetadata.java | 66 ++
.../main/java/edu/uci/ics/jung/io/graphml/Key.java | 95 ++
.../java/edu/uci/ics/jung/io/graphml/KeyMap.java | 123 ++
.../java/edu/uci/ics/jung/io/graphml/Metadata.java | 43 +
.../edu/uci/ics/jung/io/graphml/NodeMetadata.java | 66 ++
.../edu/uci/ics/jung/io/graphml/PortMetadata.java | 45 +
.../io/graphml/parser/AbstractElementParser.java | 60 +
.../jung/io/graphml/parser/DataElementParser.java | 93 ++
.../jung/io/graphml/parser/EdgeElementParser.java | 111 ++
.../ics/jung/io/graphml/parser/ElementParser.java | 28 +
.../io/graphml/parser/ElementParserRegistry.java | 71 ++
.../io/graphml/parser/EndpointElementParser.java | 120 ++
.../jung/io/graphml/parser/GraphElementParser.java | 253 +++++
.../jung/io/graphml/parser/GraphMLEventFilter.java | 41 +
.../io/graphml/parser/HyperEdgeElementParser.java | 98 ++
.../jung/io/graphml/parser/KeyElementParser.java | 133 +++
.../jung/io/graphml/parser/NodeElementParser.java | 103 ++
.../ics/jung/io/graphml/parser/ParserContext.java | 77 ++
.../jung/io/graphml/parser/PortElementParser.java | 102 ++
.../io/graphml/parser/StringElementParser.java | 66 ++
.../io/graphml/parser/UnknownElementParser.java | 83 ++
.../src/main/java/edu/uci/ics/jung/io/package.html | 24 +
jung-io/src/site/site.xml | 14 +
.../java/edu/uci/ics/jung/io/PajekNetIOTest.java | 433 +++++++
.../edu/uci/ics/jung/io/TestGraphMLReader.java | 280 +++++
.../edu/uci/ics/jung/io/TestGraphMLWriter.java | 169 +++
.../edu/uci/ics/jung/io/graphml/DummyEdge.java | 29 +
.../ics/jung/io/graphml/DummyGraphObjectBase.java | 53 +
.../edu/uci/ics/jung/io/graphml/DummyVertex.java | 21 +
.../ics/jung/io/graphml/TestGraphMLReader2.java | 447 ++++++++
.../jung/io/graphml/parser/AbstractParserTest.java | 76 ++
.../io/graphml/parser/TestEdgeElementParser.java | 168 +++
.../graphml/parser/TestEndpointElementParser.java | 142 +++
.../io/graphml/parser/TestGraphElementParser.java | 207 ++++
.../graphml/parser/TestHyperEdgeElementParser.java | 114 ++
.../io/graphml/parser/TestKeyElementParser.java | 166 +++
.../io/graphml/parser/TestNodeElementParser.java | 131 +++
.../io/graphml/parser/TestPortElementParser.java | 85 ++
jung-io/src/test/resources/attributes.graphml | 41 +
.../edu/uci/ics/jung/io/graphml/attributes.graphml | 41 +
.../edu/uci/ics/jung/io/graphml/hyper.graphml | 29 +
.../edu/uci/ics/jung/io/graphml/multigraph.graphml | 66 ++
jung-io/src/test/resources/hyper.graphml | 29 +
jung-samples-2.0.1-sources.jar | Bin 551968 -> 0 bytes
jung-samples/pom.xml | 90 ++
jung-samples/simple.graphml | 30 +
jung-samples/src/main/assembly/assembly.xml | 14 +
.../java/edu/uci/ics/jung/samples/AddNodeDemo.java | 198 ++++
.../uci/ics/jung/samples/AnimatingAddNodeDemo.java | 258 +++++
.../edu/uci/ics/jung/samples/AnnotationsDemo.java | 197 ++++
.../uci/ics/jung/samples/BalloonLayoutDemo.java | 337 ++++++
.../edu/uci/ics/jung/samples/ClusteringDemo.java | 333 ++++++
.../samples/DemoLensVertexImageShaperDemo.java | 419 +++++++
.../uci/ics/jung/samples/DrawnIconVertexDemo.java | 197 ++++
.../edu/uci/ics/jung/samples/EdgeLabelDemo.java | 349 ++++++
.../edu/uci/ics/jung/samples/GraphEditorDemo.java | 300 +++++
.../uci/ics/jung/samples/GraphFromGraphMLDemo.java | 176 +++
.../ics/jung/samples/GraphZoomScrollPaneDemo.java | 261 +++++
.../uci/ics/jung/samples/ImageEdgeLabelDemo.java | 171 +++
.../samples/InternalFrameSatelliteViewDemo.java | 205 ++++
.../uci/ics/jung/samples/L2RTreeLayoutDemo.java | 297 +++++
.../java/edu/uci/ics/jung/samples/LensDemo.java | 449 ++++++++
.../jung/samples/LensVertexImageShaperDemo.java | 431 +++++++
.../ics/jung/samples/MinimumSpanningTreeDemo.java | 266 +++++
.../edu/uci/ics/jung/samples/MultiViewDemo.java | 335 ++++++
.../uci/ics/jung/samples/PersistentLayoutDemo.java | 139 +++
.../ics/jung/samples/PluggableRendererDemo.java | 1198 ++++++++++++++++++++
.../uci/ics/jung/samples/RadialTreeLensDemo.java | 304 +++++
.../uci/ics/jung/samples/SatelliteViewDemo.java | 298 +++++
.../edu/uci/ics/jung/samples/ShortestPathDemo.java | 309 +++++
.../java/edu/uci/ics/jung/samples/ShowLayouts.java | 281 +++++
.../edu/uci/ics/jung/samples/SimpleGraphDraw.java | 58 +
.../edu/uci/ics/jung/samples/SubLayoutDemo.java | 393 +++++++
.../edu/uci/ics/jung/samples/TreeCollapseDemo.java | 384 +++++++
.../edu/uci/ics/jung/samples/TreeLayoutDemo.java | 283 +++++
.../edu/uci/ics/jung/samples/TwoModelDemo.java | 185 +++
.../edu/uci/ics/jung/samples/UnicodeLabelDemo.java | 243 ++++
.../uci/ics/jung/samples/VertexCollapseDemo.java | 346 ++++++
.../samples/VertexCollapseDemoWithLayouts.java | 446 ++++++++
.../ics/jung/samples/VertexImageShaperDemo.java | 553 +++++++++
.../ics/jung/samples/VertexLabelAsShapeDemo.java | 161 +++
.../ics/jung/samples/VertexLabelPositionDemo.java | 174 +++
.../jung/samples/VisualizationImageServerDemo.java | 135 +++
.../uci/ics/jung/samples/WorldMapGraphDemo.java | 306 +++++
.../java/edu/uci/ics/jung/samples/package.html | 36 +
.../src/main/resources/datasets/simple.net | 33 +
jung-samples/src/main/resources/datasets/smyth.net | 842 ++++++++++++++
.../src/main/resources/datasets/weighted.net | 8 +
.../src/main/resources/datasets/zachary.net | 114 ++
.../src/main/resources/images/Sandstone.jpg | Bin 0 -> 51902 bytes
jung-samples/src/main/resources/images/china.gif | Bin 0 -> 854 bytes
jung-samples/src/main/resources/images/france.gif | Bin 0 -> 875 bytes
jung-samples/src/main/resources/images/germany.gif | Bin 0 -> 77 bytes
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jung-samples/src/main/resources/images/topicx.gif | Bin 0 -> 1256 bytes
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jung-samples/src/site/site.xml | 14 +
jung-visualization-2.0.1-sources.jar | Bin 219700 -> 0 bytes
jung-visualization/assembly.xml | 14 +
jung-visualization/pom.xml | 36 +
.../ics/jung/visualization/BasicTransformer.java | 173 +++
.../visualization/BasicVisualizationServer.java | 508 +++++++++
.../visualization/DefaultVisualizationModel.java | 188 +++
.../jung/visualization/FourPassImageShaper.java | 251 ++++
.../jung/visualization/GraphZoomScrollPane.java | 328 ++++++
.../java/edu/uci/ics/jung/visualization/Layer.java | 5 +
.../uci/ics/jung/visualization/LayeredIcon.java | 48 +
.../jung/visualization/MultiLayerTransformer.java | 28 +
.../jung/visualization/PivotingImageShaper.java | 208 ++++
.../jung/visualization/PluggableRenderContext.java | 447 ++++++++
.../uci/ics/jung/visualization/RenderContext.java | 210 ++++
.../visualization/VisualizationImageServer.java | 71 ++
.../ics/jung/visualization/VisualizationModel.java | 72 ++
.../jung/visualization/VisualizationServer.java | 198 ++++
.../jung/visualization/VisualizationViewer.java | 191 ++++
.../annotations/AnnotatingGraphMousePlugin.java | 304 +++++
.../annotations/AnnotatingModalGraphMouse.java | 264 +++++
.../jung/visualization/annotations/Annotation.java | 99 ++
.../annotations/AnnotationControls.java | 130 +++
.../annotations/AnnotationManager.java | 152 +++
.../annotations/AnnotationPaintable.java | 129 +++
.../annotations/AnnotationRenderer.java | 192 ++++
.../jung/visualization/annotations/package.html | 19 +
.../control/AbsoluteCrossoverScalingControl.java | 55 +
.../control/AbstractGraphMousePlugin.java | 84 ++
.../control/AbstractModalGraphMouse.java | 305 +++++
.../control/AbstractPopupGraphMousePlugin.java | 51 +
.../control/AnimatedPickingGraphMousePlugin.java | 155 +++
.../control/CrossoverScalingControl.java | 81 ++
.../control/CubicCurveEdgeEffects.java | 140 +++
.../control/DefaultModalGraphMouse.java | 109 ++
.../jung/visualization/control/EdgeEffects.java | 25 +
.../jung/visualization/control/EdgeSupport.java | 25 +
.../control/EditingGraphMousePlugin.java | 178 +++
.../control/EditingModalGraphMouse.java | 312 +++++
.../control/EditingPopupGraphMousePlugin.java | 115 ++
.../visualization/control/GraphMouseAdapter.java | 42 +
.../visualization/control/GraphMouseListener.java | 29 +
.../visualization/control/GraphMousePlugin.java | 38 +
.../control/LabelEditingGraphMousePlugin.java | 156 +++
.../control/LayoutScalingControl.java | 42 +
.../control/LensMagnificationGraphMousePlugin.java | 116 ++
.../control/LensTranslatingGraphMousePlugin.java | 184 +++
.../visualization/control/ModalGraphMouse.java | 36 +
.../visualization/control/ModalLensGraphMouse.java | 95 ++
.../control/ModalSatelliteGraphMouse.java | 43 +
.../control/MouseListenerTranslator.java | 90 ++
.../control/PickingGraphMousePlugin.java | 376 ++++++
.../visualization/control/PluggableGraphMouse.java | 153 +++
.../control/RotatingGraphMousePlugin.java | 197 ++++
.../SatelliteAnimatedPickingGraphMousePlugin.java | 87 ++
.../control/SatelliteRotatingGraphMousePlugin.java | 73 ++
.../control/SatelliteScalingGraphMousePlugin.java | 63 +
.../control/SatelliteShearingGraphMousePlugin.java | 82 ++
.../SatelliteTranslatingGraphMousePlugin.java | 75 ++
.../control/SatelliteVisualizationViewer.java | 129 +++
.../jung/visualization/control/ScalingControl.java | 25 +
.../control/ScalingGraphMousePlugin.java | 131 +++
.../control/ShearingGraphMousePlugin.java | 166 +++
.../visualization/control/SimpleEdgeSupport.java | 86 ++
.../visualization/control/SimpleVertexSupport.java | 56 +
.../control/TranslatingGraphMousePlugin.java | 125 ++
.../jung/visualization/control/VertexSupport.java | 22 +
.../visualization/control/ViewScalingControl.java | 40 +
.../control/ViewTranslatingGraphMousePlugin.java | 117 ++
.../ics/jung/visualization/control/package.html | 20 +
.../decorators/AbstractVertexShapeTransformer.java | 57 +
.../ConstantDirectionalEdgeValueTransformer.java | 68 ++
.../DirectionalEdgeArrowTransformer.java | 50 +
.../jung/visualization/decorators/EdgeShape.java | 321 ++++++
.../decorators/EllipseVertexShapeTransformer.java | 37 +
.../decorators/GradientEdgePaintTransformer.java | 107 ++
.../InterpolatingVertexSizeTransformer.java | 72 ++
.../decorators/NumberFormattingTransformer.java | 42 +
.../decorators/ParallelEdgeShapeTransformer.java | 40 +
.../decorators/PickableEdgePaintTransformer.java | 59 +
.../decorators/PickableVertexIconTransformer.java | 55 +
.../decorators/PickableVertexPaintTransformer.java | 55 +
.../decorators/SettableVertexShapeTransformer.java | 29 +
.../visualization/decorators/ToStringLabeller.java | 35 +
.../decorators/VertexIconShapeTransformer.java | 116 ++
.../ics/jung/visualization/decorators/package.html | 20 +
.../layout/BoundingRectangleCollector.java | 86 ++
.../layout/BoundingRectanglePaintable.java | 56 +
.../jung/visualization/layout/CachingLayout.java | 69 ++
.../visualization/layout/LayoutChangeListener.java | 7 +
.../ics/jung/visualization/layout/LayoutEvent.java | 26 +
.../visualization/layout/LayoutEventSupport.java | 9 +
.../visualization/layout/LayoutTransition.java | 57 +
.../layout/ObservableCachingLayout.java | 140 +++
.../visualization/layout/PersistentLayout.java | 51 +
.../visualization/layout/PersistentLayoutImpl.java | 173 +++
.../uci/ics/jung/visualization/layout/package.html | 20 +
.../edu/uci/ics/jung/visualization/package.html | 19 +
.../visualization/picking/AbstractPickedState.java | 44 +
.../picking/ClosestShapePickSupport.java | 141 +++
.../picking/LayoutLensShapePickSupport.java | 202 ++++
.../visualization/picking/MultiPickedState.java | 82 ++
.../ics/jung/visualization/picking/PickedInfo.java | 23 +
.../jung/visualization/picking/PickedState.java | 48 +
.../visualization/picking/RadiusPickSupport.java | 98 ++
.../visualization/picking/ShapePickSupport.java | 472 ++++++++
.../picking/ViewLensShapePickSupport.java | 233 ++++
.../ics/jung/visualization/picking/package.html | 19 +
.../renderers/BasicEdgeArrowRenderingSupport.java | 203 ++++
.../renderers/BasicEdgeLabelRenderer.java | 113 ++
.../visualization/renderers/BasicEdgeRenderer.java | 293 +++++
.../visualization/renderers/BasicRenderer.java | 137 +++
.../renderers/BasicVertexLabelRenderer.java | 202 ++++
.../renderers/BasicVertexRenderer.java | 136 +++
.../renderers/CachingEdgeRenderer.java | 180 +++
.../visualization/renderers/CachingRenderer.java | 15 +
.../renderers/CachingVertexRenderer.java | 77 ++
.../renderers/CenterEdgeArrowRenderingSupport.java | 158 +++
.../jung/visualization/renderers/Checkmark.java | 63 +
.../renderers/DefaultEdgeLabelRenderer.java | 228 ++++
.../renderers/DefaultVertexLabelRenderer.java | 204 ++++
.../renderers/EdgeArrowRenderingSupport.java | 63 +
.../visualization/renderers/EdgeLabelRenderer.java | 45 +
.../renderers/GradientVertexRenderer.java | 141 +++
.../ics/jung/visualization/renderers/Renderer.java | 92 ++
.../renderers/ReshapingEdgeRenderer.java | 411 +++++++
.../renderers/VertexLabelAsShapeRenderer.java | 121 ++
.../renderers/VertexLabelRenderer.java | 41 +
.../ics/jung/visualization/renderers/package.html | 19 +
.../jung/visualization/spatial/AggregateGraph.java | 271 +++++
.../visualization/spatial/FastRenderingGraph.java | 315 +++++
.../visualization/spatial/FastRenderingLayout.java | 74 ++
.../visualization/subLayout/GraphCollapser.java | 189 +++
.../visualization/subLayout/TreeCollapser.java | 53 +
.../ics/jung/visualization/subLayout/package.html | 19 +
.../transform/AbstractLensSupport.java | 185 +++
.../visualization/transform/AffineTransformer.java | 273 +++++
.../transform/BidirectionalTransformer.java | 36 +
.../transform/HyperbolicTransformer.java | 120 ++
.../visualization/transform/LayoutLensSupport.java | 88 ++
.../jung/visualization/transform/LensSupport.java | 29 +
.../visualization/transform/LensTransformer.java | 175 +++
.../transform/MagnifyTransformer.java | 146 +++
.../transform/MutableAffineTransformer.java | 218 ++++
.../transform/MutableTransformer.java | 67 ++
.../transform/MutableTransformerDecorator.java | 151 +++
.../ics/jung/visualization/transform/package.html | 19 +
.../transform/shape/Graphics2DWrapper.java | 674 +++++++++++
.../transform/shape/GraphicsDecorator.java | 50 +
.../shape/HyperbolicShapeTransformer.java | 226 ++++
.../visualization/transform/shape/Intersector.java | 116 ++
.../transform/shape/MagnifyIconGraphics.java | 85 ++
.../transform/shape/MagnifyImageLensSupport.java | 106 ++
.../transform/shape/MagnifyShapeTransformer.java | 271 +++++
.../transform/shape/ShapeFlatnessTransformer.java | 35 +
.../transform/shape/ShapeTransformer.java | 34 +
.../shape/TransformingFlatnessGraphics.java | 62 +
.../transform/shape/TransformingGraphics.java | 150 +++
.../transform/shape/ViewLensSupport.java | 93 ++
.../visualization/transform/shape/package.html | 19 +
.../uci/ics/jung/visualization/util/Animator.java | 82 ++
.../ics/jung/visualization/util/ArrowFactory.java | 65 ++
.../uci/ics/jung/visualization/util/Caching.java | 32 +
.../visualization/util/ChangeEventSupport.java | 42 +
.../util/DefaultChangeEventSupport.java | 79 ++
.../visualization/util/GeneralPathAsString.java | 51 +
.../jung/visualization/util/ImageShapeUtils.java | 105 ++
.../ics/jung/visualization/util/LabelWrapper.java | 87 ++
.../util/PredicatedParallelEdgeIndexFunction.java | 152 +++
.../visualization/util/VertexShapeFactory.java | 224 ++++
.../uci/ics/jung/visualization/util/package.html | 19 +
jung-visualization/src/site/site.xml | 14 +
.../BasicVisualizationServerTest.java | 23 +
.../ics/jung/visualization/TestImageShaper.java | 55 +
.../control/TestCrossoverScalingControl.java | 76 ++
pom.xml | 264 +++++
tools/deploy_snapshots.sh | 13 +
tools/mvn-deploy.sh | 21 +
tools/settings.xml | 9 +
535 files changed, 70188 insertions(+), 16 deletions(-)
create mode 100644 .gitignore
create mode 100644 .travis.yml
create mode 100644 AUTHORS
create mode 100644 CONTRIBUTING.md
create mode 100644 LICENSE
create mode 100644 README.md
create mode 100644 RELEASE.md
delete mode 100644 jung-algorithms-2.0.1-sources.jar
create mode 100644 jung-algorithms/assembly.xml
create mode 100644 jung-algorithms/pom.xml
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/blockmodel/StructurallyEquivalent.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/blockmodel/VertexPartition.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/blockmodel/package.html
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/cluster/BicomponentClusterer.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/cluster/EdgeBetweennessClusterer.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/cluster/VoltageClusterer.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/cluster/WeakComponentClusterer.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/cluster/package.html
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/filters/EdgePredicateFilter.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/filters/Filter.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/filters/FilterUtils.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/filters/KNeighborhoodFilter.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/filters/VertexPredicateFilter.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/filters/package.html
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/flows/EdmondsKarpMaxFlow.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/flows/package.html
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/generators/EvolvingGraphGenerator.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/generators/GraphGenerator.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/generators/Lattice2DGenerator.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/generators/package.html
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/generators/random/BarabasiAlbertGenerator.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/generators/random/EppsteinPowerLawGenerator.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/generators/random/ErdosRenyiGenerator.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/generators/random/KleinbergSmallWorldGenerator.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/generators/random/MixedRandomGraphGenerator.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/generators/random/package.html
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/importance/AbstractRanker.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/importance/BetweennessCentrality.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/importance/KStepMarkov.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/importance/Ranking.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/importance/RelativeAuthorityRanker.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/importance/WeightedNIPaths.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/layout/AbstractLayout.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/layout/AggregateLayout.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/layout/BalloonLayout.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/layout/CircleLayout.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/layout/DAGLayout.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/layout/FRLayout.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/layout/FRLayout2.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/layout/GraphElementAccessor.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/layout/ISOMLayout.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/layout/KKLayout.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/layout/Layout.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/layout/LayoutDecorator.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/layout/PolarPoint.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/layout/RadialTreeLayout.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/layout/RadiusGraphElementAccessor.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/layout/SpringLayout.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/layout/SpringLayout2.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/layout/StaticLayout.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/layout/TreeLayout.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/layout/package.html
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/layout/util/RandomLocationTransformer.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/layout/util/Relaxer.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/layout/util/VisRunner.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/layout/util/package.html
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/metrics/Metrics.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/metrics/StructuralHoles.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/metrics/TriadicCensus.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/metrics/package.html
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/package.html
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/scoring/AbstractIterativeScorer.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/scoring/AbstractIterativeScorerWithPriors.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/scoring/BarycenterScorer.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/scoring/BetweennessCentrality.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/scoring/ClosenessCentrality.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/scoring/DegreeScorer.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/scoring/DistanceCentralityScorer.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/scoring/EdgeScorer.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/scoring/EigenvectorCentrality.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/scoring/HITS.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/scoring/HITSWithPriors.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/scoring/KStepMarkov.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/scoring/PageRank.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/scoring/PageRankWithPriors.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/scoring/VertexScorer.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/scoring/VoltageScorer.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/scoring/package.html
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/scoring/util/DelegateToEdgeTransformer.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/scoring/util/ScoringUtils.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/scoring/util/UniformDegreeWeight.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/scoring/util/UniformInOut.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/scoring/util/VEPair.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/scoring/util/VertexScoreTransformer.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/scoring/util/package.html
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/shortestpath/BFSDistanceLabeler.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/shortestpath/DijkstraDistance.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/shortestpath/DijkstraShortestPath.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/shortestpath/Distance.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/shortestpath/DistanceStatistics.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/shortestpath/MinimumSpanningForest.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/shortestpath/MinimumSpanningForest2.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/shortestpath/PrimMinimumSpanningTree.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/shortestpath/ShortestPath.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/shortestpath/ShortestPathUtils.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/shortestpath/UnweightedShortestPath.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/shortestpath/package.html
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/transformation/DirectionTransformer.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/transformation/FoldingTransformer.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/transformation/VertexPartitionCollapser.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/transformation/package.html
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/util/BasicMapEntry.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/util/DiscreteDistribution.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/util/Indexer.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/util/IterativeContext.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/util/IterativeProcess.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/util/KMeansClusterer.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/util/MapBinaryHeap.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/util/MapSettableTransformer.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/util/SelfLoopEdgePredicate.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/util/SettableTransformer.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/util/WeightedChoice.java
create mode 100644 jung-algorithms/src/main/java/edu/uci/ics/jung/algorithms/util/package.html
create mode 100644 jung-algorithms/src/site/site.xml
create mode 100644 jung-algorithms/src/test/java/edu/uci/ics/jung/algorithms/cluster/TestBicomponentClusterer.java
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