[med-svn] [libjung-java] branch upstream updated (5fe93a4 -> 5fa88fc)

[Andreas Tille]

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tille pushed a change to branch upstream
in repository libjung-java.

      from  5fe93a4   Imported Upstream version 2.0.1+dfsg
       new  5fa88fc   New upstream version 2.1.1

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .gitignore                                         |   25 +
 .travis.yml                                        |   35 +
 AUTHORS                                            |   19 +
 CONTRIBUTING.md                                    |   35 +
 LICENSE                                            |   41 +
 README.md                                          |   52 +
 RELEASE.md                                         |  229 ++++
 jung-algorithms-2.0.1-sources.jar                  |  Bin 208091 -> 0 bytes
 jung-algorithms/assembly.xml                       |   19 +
 jung-algorithms/pom.xml                            |   32 +
 .../blockmodel/StructurallyEquivalent.java         |  174 +++
 .../algorithms/blockmodel/VertexPartition.java     |  131 +++
 .../ics/jung/algorithms/blockmodel/package.html    |   32 +
 .../algorithms/cluster/BicomponentClusterer.java   |  165 +++
 .../cluster/EdgeBetweennessClusterer.java          |  109 ++
 .../jung/algorithms/cluster/VoltageClusterer.java  |  370 ++++++
 .../algorithms/cluster/WeakComponentClusterer.java |   73 ++
 .../uci/ics/jung/algorithms/cluster/package.html   |   34 +
 .../algorithms/filters/EdgePredicateFilter.java    |   70 ++
 .../uci/ics/jung/algorithms/filters/Filter.java    |   26 +
 .../ics/jung/algorithms/filters/FilterUtils.java   |  100 ++
 .../algorithms/filters/KNeighborhoodFilter.java    |  142 +++
 .../algorithms/filters/VertexPredicateFilter.java  |   75 ++
 .../uci/ics/jung/algorithms/filters/package.html   |   30 +
 .../jung/algorithms/flows/EdmondsKarpMaxFlow.java  |  314 +++++
 .../edu/uci/ics/jung/algorithms/flows/package.html |   19 +
 .../generators/EvolvingGraphGenerator.java         |   31 +
 .../jung/algorithms/generators/GraphGenerator.java |   21 +
 .../algorithms/generators/Lattice2DGenerator.java  |  196 ++++
 .../ics/jung/algorithms/generators/package.html    |   19 +
 .../generators/random/BarabasiAlbertGenerator.java |  293 +++++
 .../random/EppsteinPowerLawGenerator.java          |  128 +++
 .../generators/random/ErdosRenyiGenerator.java     |  105 ++
 .../random/KleinbergSmallWorldGenerator.java       |  192 ++++
 .../random/MixedRandomGraphGenerator.java          |   80 ++
 .../jung/algorithms/generators/random/package.html |   27 +
 .../jung/algorithms/importance/AbstractRanker.java |  392 +++++++
 .../importance/BetweennessCentrality.java          |  189 +++
 .../jung/algorithms/importance/KStepMarkov.java    |  135 +++
 .../ics/jung/algorithms/importance/Ranking.java    |   79 ++
 .../importance/RelativeAuthorityRanker.java        |   73 ++
 .../algorithms/importance/WeightedNIPaths.java     |  196 ++++
 .../ics/jung/algorithms/layout/AbstractLayout.java |  292 +++++
 .../jung/algorithms/layout/AggregateLayout.java    |  250 ++++
 .../ics/jung/algorithms/layout/BalloonLayout.java  |  145 +++
 .../ics/jung/algorithms/layout/CircleLayout.java   |  148 +++
 .../uci/ics/jung/algorithms/layout/DAGLayout.java  |  340 ++++++
 .../uci/ics/jung/algorithms/layout/FRLayout.java   |  318 ++++++
 .../uci/ics/jung/algorithms/layout/FRLayout2.java  |  317 ++++++
 .../algorithms/layout/GraphElementAccessor.java    |   49 +
 .../uci/ics/jung/algorithms/layout/ISOMLayout.java |  225 ++++
 .../uci/ics/jung/algorithms/layout/KKLayout.java   |  417 +++++++
 .../edu/uci/ics/jung/algorithms/layout/Layout.java |   87 ++
 .../jung/algorithms/layout/LayoutDecorator.java    |  107 ++
 .../uci/ics/jung/algorithms/layout/PolarPoint.java |  106 ++
 .../jung/algorithms/layout/RadialTreeLayout.java   |  116 ++
 .../layout/RadiusGraphElementAccessor.java         |  192 ++++
 .../ics/jung/algorithms/layout/SpringLayout.java   |  330 ++++++
 .../ics/jung/algorithms/layout/SpringLayout2.java  |  139 +++
 .../ics/jung/algorithms/layout/StaticLayout.java   |   49 +
 .../uci/ics/jung/algorithms/layout/TreeLayout.java |  252 ++++
 .../uci/ics/jung/algorithms/layout/package.html    |   39 +
 .../layout/util/RandomLocationTransformer.java     |   62 +
 .../ics/jung/algorithms/layout/util/Relaxer.java   |   43 +
 .../ics/jung/algorithms/layout/util/VisRunner.java |  146 +++
 .../ics/jung/algorithms/layout/util/package.html   |   20 +
 .../uci/ics/jung/algorithms/metrics/Metrics.java   |   74 ++
 .../jung/algorithms/metrics/StructuralHoles.java   |  343 ++++++
 .../ics/jung/algorithms/metrics/TriadicCensus.java |  209 ++++
 .../uci/ics/jung/algorithms/metrics/package.html   |   26 +
 .../java/edu/uci/ics/jung/algorithms/package.html  |   42 +
 .../scoring/AbstractIterativeScorer.java           |  370 ++++++
 .../scoring/AbstractIterativeScorerWithPriors.java |  117 ++
 .../jung/algorithms/scoring/BarycenterScorer.java  |   55 +
 .../algorithms/scoring/BetweennessCentrality.java  |  350 ++++++
 .../algorithms/scoring/ClosenessCentrality.java    |   55 +
 .../ics/jung/algorithms/scoring/DegreeScorer.java  |   45 +
 .../scoring/DistanceCentralityScorer.java          |  249 ++++
 .../ics/jung/algorithms/scoring/EdgeScorer.java    |   28 +
 .../algorithms/scoring/EigenvectorCentrality.java  |   52 +
 .../edu/uci/ics/jung/algorithms/scoring/HITS.java  |  147 +++
 .../jung/algorithms/scoring/HITSWithPriors.java    |  199 ++++
 .../ics/jung/algorithms/scoring/KStepMarkov.java   |  157 +++
 .../uci/ics/jung/algorithms/scoring/PageRank.java  |   70 ++
 .../algorithms/scoring/PageRankWithPriors.java     |  142 +++
 .../ics/jung/algorithms/scoring/VertexScorer.java  |   28 +
 .../ics/jung/algorithms/scoring/VoltageScorer.java |  250 ++++
 .../uci/ics/jung/algorithms/scoring/package.html   |   42 +
 .../scoring/util/DelegateToEdgeTransformer.java    |   48 +
 .../jung/algorithms/scoring/util/ScoringUtils.java |   72 ++
 .../scoring/util/UniformDegreeWeight.java          |   55 +
 .../jung/algorithms/scoring/util/UniformInOut.java |   53 +
 .../ics/jung/algorithms/scoring/util/VEPair.java   |   56 +
 .../scoring/util/VertexScoreTransformer.java       |   46 +
 .../ics/jung/algorithms/scoring/util/package.html  |   34 +
 .../shortestpath/BFSDistanceLabeler.java           |  170 +++
 .../algorithms/shortestpath/DijkstraDistance.java  |  545 +++++++++
 .../shortestpath/DijkstraShortestPath.java         |  297 +++++
 .../ics/jung/algorithms/shortestpath/Distance.java |   46 +
 .../shortestpath/DistanceStatistics.java           |  165 +++
 .../shortestpath/MinimumSpanningForest.java        |  163 +++
 .../shortestpath/MinimumSpanningForest2.java       |  106 ++
 .../shortestpath/PrimMinimumSpanningTree.java      |  118 ++
 .../jung/algorithms/shortestpath/ShortestPath.java |   31 +
 .../algorithms/shortestpath/ShortestPathUtils.java |   62 +
 .../shortestpath/UnweightedShortestPath.java       |  152 +++
 .../ics/jung/algorithms/shortestpath/package.html  |   30 +
 .../transformation/DirectionTransformer.java       |  125 ++
 .../transformation/FoldingTransformer.java         |  325 ++++++
 .../transformation/VertexPartitionCollapser.java   |  103 ++
 .../jung/algorithms/transformation/package.html    |   28 +
 .../ics/jung/algorithms/util/BasicMapEntry.java    |   81 ++
 .../jung/algorithms/util/DiscreteDistribution.java |  219 ++++
 .../edu/uci/ics/jung/algorithms/util/Indexer.java  |   56 +
 .../ics/jung/algorithms/util/IterativeContext.java |   28 +
 .../ics/jung/algorithms/util/IterativeProcess.java |  174 +++
 .../ics/jung/algorithms/util/KMeansClusterer.java  |  257 +++++
 .../ics/jung/algorithms/util/MapBinaryHeap.java    |  379 +++++++
 .../algorithms/util/MapSettableTransformer.java    |   45 +
 .../algorithms/util/SelfLoopEdgePredicate.java     |   23 +
 .../jung/algorithms/util/SettableTransformer.java  |   31 +
 .../ics/jung/algorithms/util/WeightedChoice.java   |  203 ++++
 .../edu/uci/ics/jung/algorithms/util/package.html  |   31 +
 jung-algorithms/src/site/site.xml                  |   14 +
 .../cluster/TestBicomponentClusterer.java          |  268 +++++
 .../cluster/TestEdgeBetweennessClusterer.java      |   83 ++
 .../cluster/WeakComponentClustererTest.java        |   19 +
 .../filters/impl/TestKNeighborhoodFilter.java      |   62 +
 .../algorithms/flows/TestEdmondsKarpMaxFlow.java   |  211 ++++
 .../jung/algorithms/generators/TestLattice2D.java  |   87 ++
 .../generators/random/TestBarabasiAlbert.java      |  254 +++++
 .../random/TestEppsteinPowerLawGenerator.java      |  106 ++
 .../generators/random/TestErdosRenyi.java          |   71 ++
 .../generators/random/TestKleinberg.java           |   39 +
 .../importance/TestBetweennessCentrality.java      |  119 ++
 .../algorithms/importance/TestKStepMarkov.java     |   86 ++
 .../algorithms/importance/TestWeightedNIPaths.java |   85 ++
 .../ics/jung/algorithms/layout/FRLayout2Test.java  |   31 +
 .../ics/jung/algorithms/layout/FRLayoutTest.java   |   31 +
 .../uci/ics/jung/algorithms/metrics/TestTriad.java |  166 +++
 .../scoring/TestBetweennessCentrality.java         |  138 +++
 .../uci/ics/jung/algorithms/scoring/TestHITS.java  |  119 ++
 .../algorithms/scoring/TestHITSWithPriors.java     |   77 ++
 .../jung/algorithms/scoring/TestKStepMarkov.java   |   70 ++
 .../ics/jung/algorithms/scoring/TestPageRank.java  |   80 ++
 .../algorithms/scoring/TestPageRankWithPriors.java |   91 ++
 .../jung/algorithms/scoring/TestVoltageScore.java  |   79 ++
 .../shortestpath/TestBFSDistanceLabeler.java       |   67 ++
 .../shortestpath/TestPrimMinimumSpanningTree.java  |   62 +
 .../algorithms/shortestpath/TestShortestPath.java  |  528 +++++++++
 .../shortestpath/TestUnweightedShortestPath.java   |   95 ++
 .../uci/ics/jung/algorithms/util/NotRandom.java    |   60 +
 .../jung/algorithms/util/TestWeightedChoice.java   |   78 ++
 jung-api-2.0.1-sources.jar                         |  Bin 32291 -> 0 bytes
 jung-api/assembly.xml                              |   19 +
 jung-api/pom.xml                                   |   40 +
 .../java/edu/uci/ics/jung/graph/DirectedGraph.java |   24 +
 .../main/java/edu/uci/ics/jung/graph/Forest.java   |   96 ++
 .../main/java/edu/uci/ics/jung/graph/Graph.java    |  247 ++++
 .../edu/uci/ics/jung/graph/GraphDecorator.java     |  332 ++++++
 .../java/edu/uci/ics/jung/graph/Hypergraph.java    |  442 ++++++++
 .../java/edu/uci/ics/jung/graph/KPartiteGraph.java |   40 +
 .../java/edu/uci/ics/jung/graph/MultiGraph.java    |   20 +
 .../edu/uci/ics/jung/graph/ObservableGraph.java    |  142 +++
 .../src/main/java/edu/uci/ics/jung/graph/Tree.java |   52 +
 .../edu/uci/ics/jung/graph/UndirectedGraph.java    |   18 +
 .../edu/uci/ics/jung/graph/event/GraphEvent.java   |  117 ++
 .../ics/jung/graph/event/GraphEventListener.java   |   18 +
 .../java/edu/uci/ics/jung/graph/event/package.html |   19 +
 .../main/java/edu/uci/ics/jung/graph/package.html  |   53 +
 .../java/edu/uci/ics/jung/graph/util/Context.java  |   50 +
 .../util/DefaultParallelEdgeIndexFunction.java     |  148 +++
 .../uci/ics/jung/graph/util/EdgeIndexFunction.java |   54 +
 .../java/edu/uci/ics/jung/graph/util/EdgeType.java |   22 +
 .../java/edu/uci/ics/jung/graph/util/Graphs.java   |  989 ++++++++++++++++
 .../jung/graph/util/IncidentEdgeIndexFunction.java |  118 ++
 .../java/edu/uci/ics/jung/graph/util/Pair.java     |  249 ++++
 .../edu/uci/ics/jung/graph/util/TreeUtils.java     |  120 ++
 .../java/edu/uci/ics/jung/graph/util/package.html  |   28 +
 jung-api/src/site/site.xml                         |   14 +
 .../AbstractDirectedSparseMultigraphTest.java      |  131 +++
 .../uci/ics/jung/graph/AbstractHypergraphTest.java |  172 +++
 .../graph/AbstractOrderedSparseMultigraphTest.java |  162 +++
 .../graph/AbstractSortedSparseMultigraphTest.java  |  164 +++
 .../jung/graph/AbstractSparseMultigraphTest.java   |  160 +++
 .../uci/ics/jung/graph/AbstractSparseTreeTest.java |  104 ++
 .../uci/ics/jung/graph/AbstractTreeUtilsTest.java  |   43 +
 .../AbstractUndirectedSparseMultigraphTest.java    |  124 ++
 .../java/edu/uci/ics/jung/graph/util/PairTest.java |  118 ++
 jung-graph-impl-2.0.1-sources.jar                  |  Bin 37106 -> 0 bytes
 jung-graph-impl/assembly.xml                       |   19 +
 jung-graph-impl/pom.xml                            |   32 +
 .../java/edu/uci/ics/jung/graph/AbstractGraph.java |  244 ++++
 .../edu/uci/ics/jung/graph/AbstractTypedGraph.java |   97 ++
 .../edu/uci/ics/jung/graph/DelegateForest.java     |  339 ++++++
 .../java/edu/uci/ics/jung/graph/DelegateTree.java  |  361 ++++++
 .../graph/DirectedOrderedSparseMultigraph.java     |  113 ++
 .../uci/ics/jung/graph/DirectedSparseGraph.java    |  289 +++++
 .../ics/jung/graph/DirectedSparseMultigraph.java   |  262 +++++
 .../edu/uci/ics/jung/graph/OrderedKAryTree.java    |  807 +++++++++++++
 .../ics/jung/graph/OrderedSparseMultigraph.java    |  129 +++
 .../java/edu/uci/ics/jung/graph/SetHypergraph.java |  344 ++++++
 .../uci/ics/jung/graph/SortedSparseMultigraph.java |  128 +++
 .../java/edu/uci/ics/jung/graph/SparseGraph.java   |  373 ++++++
 .../edu/uci/ics/jung/graph/SparseMultigraph.java   |  320 ++++++
 .../graph/UndirectedOrderedSparseMultigraph.java   |   88 ++
 .../uci/ics/jung/graph/UndirectedSparseGraph.java  |  243 ++++
 .../ics/jung/graph/UndirectedSparseMultigraph.java |  249 ++++
 .../edu/uci/ics/jung/graph/util/TestGraphs.java    |  248 ++++
 jung-graph-impl/src/site/site.xml                  |   14 +
 .../jung/graph/DirectedSparseMultigraphTest.java   |   20 +
 .../edu/uci/ics/jung/graph/HypergraphTest.java     |   55 +
 .../jung/graph/OrderedSparseMultigraphTest.java    |   49 +
 .../ics/jung/graph/SortedSparseMultigraphTest.java |   57 +
 .../graph/SparseGraphAddRemoveAddEdgeTest.java     |   25 +
 .../uci/ics/jung/graph/SparseMultigraphTest.java   |   49 +
 .../edu/uci/ics/jung/graph/SparseTreeTest.java     |   21 +
 .../java/edu/uci/ics/jung/graph/TreeUtilsTest.java |   23 +
 .../jung/graph/UndirectedSparseMultigraphTest.java |   18 +
 jung-io-2.0.1-sources.jar                          |  Bin 56342 -> 0 bytes
 jung-io/pom.xml                                    |   36 +
 .../main/java/edu/uci/ics/jung/io/GraphFile.java   |   40 +
 .../java/edu/uci/ics/jung/io/GraphIOException.java |   55 +
 .../java/edu/uci/ics/jung/io/GraphMLMetadata.java  |   53 +
 .../java/edu/uci/ics/jung/io/GraphMLReader.java    |  831 ++++++++++++++
 .../java/edu/uci/ics/jung/io/GraphMLWriter.java    |  440 +++++++
 .../main/java/edu/uci/ics/jung/io/GraphReader.java |   45 +
 .../java/edu/uci/ics/jung/io/PajekNetReader.java   |  532 +++++++++
 .../java/edu/uci/ics/jung/io/PajekNetWriter.java   |  220 ++++
 .../uci/ics/jung/io/graphml/AbstractMetadata.java  |   40 +
 .../edu/uci/ics/jung/io/graphml/DataMetadata.java  |   41 +
 .../edu/uci/ics/jung/io/graphml/EdgeMetadata.java  |  114 ++
 .../uci/ics/jung/io/graphml/EndpointMetadata.java  |   68 ++
 .../ics/jung/io/graphml/ExceptionConverter.java    |   54 +
 .../uci/ics/jung/io/graphml/GraphMLConstants.java  |   48 +
 .../uci/ics/jung/io/graphml/GraphMLDocument.java   |   36 +
 .../uci/ics/jung/io/graphml/GraphMLReader2.java    |  368 ++++++
 .../edu/uci/ics/jung/io/graphml/GraphMetadata.java |  164 +++
 .../uci/ics/jung/io/graphml/HyperEdgeMetadata.java |   66 ++
 .../main/java/edu/uci/ics/jung/io/graphml/Key.java |   95 ++
 .../java/edu/uci/ics/jung/io/graphml/KeyMap.java   |  123 ++
 .../java/edu/uci/ics/jung/io/graphml/Metadata.java |   43 +
 .../edu/uci/ics/jung/io/graphml/NodeMetadata.java  |   66 ++
 .../edu/uci/ics/jung/io/graphml/PortMetadata.java  |   45 +
 .../io/graphml/parser/AbstractElementParser.java   |   60 +
 .../jung/io/graphml/parser/DataElementParser.java  |   93 ++
 .../jung/io/graphml/parser/EdgeElementParser.java  |  111 ++
 .../ics/jung/io/graphml/parser/ElementParser.java  |   28 +
 .../io/graphml/parser/ElementParserRegistry.java   |   71 ++
 .../io/graphml/parser/EndpointElementParser.java   |  120 ++
 .../jung/io/graphml/parser/GraphElementParser.java |  253 +++++
 .../jung/io/graphml/parser/GraphMLEventFilter.java |   41 +
 .../io/graphml/parser/HyperEdgeElementParser.java  |   98 ++
 .../jung/io/graphml/parser/KeyElementParser.java   |  133 +++
 .../jung/io/graphml/parser/NodeElementParser.java  |  103 ++
 .../ics/jung/io/graphml/parser/ParserContext.java  |   77 ++
 .../jung/io/graphml/parser/PortElementParser.java  |  102 ++
 .../io/graphml/parser/StringElementParser.java     |   66 ++
 .../io/graphml/parser/UnknownElementParser.java    |   83 ++
 .../src/main/java/edu/uci/ics/jung/io/package.html |   24 +
 jung-io/src/site/site.xml                          |   14 +
 .../java/edu/uci/ics/jung/io/PajekNetIOTest.java   |  433 +++++++
 .../edu/uci/ics/jung/io/TestGraphMLReader.java     |  280 +++++
 .../edu/uci/ics/jung/io/TestGraphMLWriter.java     |  169 +++
 .../edu/uci/ics/jung/io/graphml/DummyEdge.java     |   29 +
 .../ics/jung/io/graphml/DummyGraphObjectBase.java  |   53 +
 .../edu/uci/ics/jung/io/graphml/DummyVertex.java   |   21 +
 .../ics/jung/io/graphml/TestGraphMLReader2.java    |  447 ++++++++
 .../jung/io/graphml/parser/AbstractParserTest.java |   76 ++
 .../io/graphml/parser/TestEdgeElementParser.java   |  168 +++
 .../graphml/parser/TestEndpointElementParser.java  |  142 +++
 .../io/graphml/parser/TestGraphElementParser.java  |  207 ++++
 .../graphml/parser/TestHyperEdgeElementParser.java |  114 ++
 .../io/graphml/parser/TestKeyElementParser.java    |  166 +++
 .../io/graphml/parser/TestNodeElementParser.java   |  131 +++
 .../io/graphml/parser/TestPortElementParser.java   |   85 ++
 jung-io/src/test/resources/attributes.graphml      |   41 +
 .../edu/uci/ics/jung/io/graphml/attributes.graphml |   41 +
 .../edu/uci/ics/jung/io/graphml/hyper.graphml      |   29 +
 .../edu/uci/ics/jung/io/graphml/multigraph.graphml |   66 ++
 jung-io/src/test/resources/hyper.graphml           |   29 +
 jung-samples-2.0.1-sources.jar                     |  Bin 551968 -> 0 bytes
 jung-samples/pom.xml                               |   90 ++
 jung-samples/simple.graphml                        |   30 +
 jung-samples/src/main/assembly/assembly.xml        |   14 +
 .../java/edu/uci/ics/jung/samples/AddNodeDemo.java |  198 ++++
 .../uci/ics/jung/samples/AnimatingAddNodeDemo.java |  258 +++++
 .../edu/uci/ics/jung/samples/AnnotationsDemo.java  |  197 ++++
 .../uci/ics/jung/samples/BalloonLayoutDemo.java    |  337 ++++++
 .../edu/uci/ics/jung/samples/ClusteringDemo.java   |  333 ++++++
 .../samples/DemoLensVertexImageShaperDemo.java     |  419 +++++++
 .../uci/ics/jung/samples/DrawnIconVertexDemo.java  |  197 ++++
 .../edu/uci/ics/jung/samples/EdgeLabelDemo.java    |  349 ++++++
 .../edu/uci/ics/jung/samples/GraphEditorDemo.java  |  300 +++++
 .../uci/ics/jung/samples/GraphFromGraphMLDemo.java |  176 +++
 .../ics/jung/samples/GraphZoomScrollPaneDemo.java  |  261 +++++
 .../uci/ics/jung/samples/ImageEdgeLabelDemo.java   |  171 +++
 .../samples/InternalFrameSatelliteViewDemo.java    |  205 ++++
 .../uci/ics/jung/samples/L2RTreeLayoutDemo.java    |  297 +++++
 .../java/edu/uci/ics/jung/samples/LensDemo.java    |  449 ++++++++
 .../jung/samples/LensVertexImageShaperDemo.java    |  431 +++++++
 .../ics/jung/samples/MinimumSpanningTreeDemo.java  |  266 +++++
 .../edu/uci/ics/jung/samples/MultiViewDemo.java    |  335 ++++++
 .../uci/ics/jung/samples/PersistentLayoutDemo.java |  139 +++
 .../ics/jung/samples/PluggableRendererDemo.java    | 1198 ++++++++++++++++++++
 .../uci/ics/jung/samples/RadialTreeLensDemo.java   |  304 +++++
 .../uci/ics/jung/samples/SatelliteViewDemo.java    |  298 +++++
 .../edu/uci/ics/jung/samples/ShortestPathDemo.java |  309 +++++
 .../java/edu/uci/ics/jung/samples/ShowLayouts.java |  281 +++++
 .../edu/uci/ics/jung/samples/SimpleGraphDraw.java  |   58 +
 .../edu/uci/ics/jung/samples/SubLayoutDemo.java    |  393 +++++++
 .../edu/uci/ics/jung/samples/TreeCollapseDemo.java |  384 +++++++
 .../edu/uci/ics/jung/samples/TreeLayoutDemo.java   |  283 +++++
 .../edu/uci/ics/jung/samples/TwoModelDemo.java     |  185 +++
 .../edu/uci/ics/jung/samples/UnicodeLabelDemo.java |  243 ++++
 .../uci/ics/jung/samples/VertexCollapseDemo.java   |  346 ++++++
 .../samples/VertexCollapseDemoWithLayouts.java     |  446 ++++++++
 .../ics/jung/samples/VertexImageShaperDemo.java    |  553 +++++++++
 .../ics/jung/samples/VertexLabelAsShapeDemo.java   |  161 +++
 .../ics/jung/samples/VertexLabelPositionDemo.java  |  174 +++
 .../jung/samples/VisualizationImageServerDemo.java |  135 +++
 .../uci/ics/jung/samples/WorldMapGraphDemo.java    |  306 +++++
 .../java/edu/uci/ics/jung/samples/package.html     |   36 +
 .../src/main/resources/datasets/simple.net         |   33 +
 jung-samples/src/main/resources/datasets/smyth.net |  842 ++++++++++++++
 .../src/main/resources/datasets/weighted.net       |    8 +
 .../src/main/resources/datasets/zachary.net        |  114 ++
 .../src/main/resources/images/Sandstone.jpg        |  Bin 0 -> 51902 bytes
 jung-samples/src/main/resources/images/china.gif   |  Bin 0 -> 854 bytes
 jung-samples/src/main/resources/images/france.gif  |  Bin 0 -> 875 bytes
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 jung-visualization/assembly.xml                    |   14 +
 jung-visualization/pom.xml                         |   36 +
 .../ics/jung/visualization/BasicTransformer.java   |  173 +++
 .../visualization/BasicVisualizationServer.java    |  508 +++++++++
 .../visualization/DefaultVisualizationModel.java   |  188 +++
 .../jung/visualization/FourPassImageShaper.java    |  251 ++++
 .../jung/visualization/GraphZoomScrollPane.java    |  328 ++++++
 .../java/edu/uci/ics/jung/visualization/Layer.java |    5 +
 .../uci/ics/jung/visualization/LayeredIcon.java    |   48 +
 .../jung/visualization/MultiLayerTransformer.java  |   28 +
 .../jung/visualization/PivotingImageShaper.java    |  208 ++++
 .../jung/visualization/PluggableRenderContext.java |  447 ++++++++
 .../uci/ics/jung/visualization/RenderContext.java  |  210 ++++
 .../visualization/VisualizationImageServer.java    |   71 ++
 .../ics/jung/visualization/VisualizationModel.java |   72 ++
 .../jung/visualization/VisualizationServer.java    |  198 ++++
 .../jung/visualization/VisualizationViewer.java    |  191 ++++
 .../annotations/AnnotatingGraphMousePlugin.java    |  304 +++++
 .../annotations/AnnotatingModalGraphMouse.java     |  264 +++++
 .../jung/visualization/annotations/Annotation.java |   99 ++
 .../annotations/AnnotationControls.java            |  130 +++
 .../annotations/AnnotationManager.java             |  152 +++
 .../annotations/AnnotationPaintable.java           |  129 +++
 .../annotations/AnnotationRenderer.java            |  192 ++++
 .../jung/visualization/annotations/package.html    |   19 +
 .../control/AbsoluteCrossoverScalingControl.java   |   55 +
 .../control/AbstractGraphMousePlugin.java          |   84 ++
 .../control/AbstractModalGraphMouse.java           |  305 +++++
 .../control/AbstractPopupGraphMousePlugin.java     |   51 +
 .../control/AnimatedPickingGraphMousePlugin.java   |  155 +++
 .../control/CrossoverScalingControl.java           |   81 ++
 .../control/CubicCurveEdgeEffects.java             |  140 +++
 .../control/DefaultModalGraphMouse.java            |  109 ++
 .../jung/visualization/control/EdgeEffects.java    |   25 +
 .../jung/visualization/control/EdgeSupport.java    |   25 +
 .../control/EditingGraphMousePlugin.java           |  178 +++
 .../control/EditingModalGraphMouse.java            |  312 +++++
 .../control/EditingPopupGraphMousePlugin.java      |  115 ++
 .../visualization/control/GraphMouseAdapter.java   |   42 +
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 .../control/LabelEditingGraphMousePlugin.java      |  156 +++
 .../control/LayoutScalingControl.java              |   42 +
 .../control/LensMagnificationGraphMousePlugin.java |  116 ++
 .../control/LensTranslatingGraphMousePlugin.java   |  184 +++
 .../visualization/control/ModalGraphMouse.java     |   36 +
 .../visualization/control/ModalLensGraphMouse.java |   95 ++
 .../control/ModalSatelliteGraphMouse.java          |   43 +
 .../control/MouseListenerTranslator.java           |   90 ++
 .../control/PickingGraphMousePlugin.java           |  376 ++++++
 .../visualization/control/PluggableGraphMouse.java |  153 +++
 .../control/RotatingGraphMousePlugin.java          |  197 ++++
 .../SatelliteAnimatedPickingGraphMousePlugin.java  |   87 ++
 .../control/SatelliteRotatingGraphMousePlugin.java |   73 ++
 .../control/SatelliteScalingGraphMousePlugin.java  |   63 +
 .../control/SatelliteShearingGraphMousePlugin.java |   82 ++
 .../SatelliteTranslatingGraphMousePlugin.java      |   75 ++
 .../control/SatelliteVisualizationViewer.java      |  129 +++
 .../jung/visualization/control/ScalingControl.java |   25 +
 .../control/ScalingGraphMousePlugin.java           |  131 +++
 .../control/ShearingGraphMousePlugin.java          |  166 +++
 .../visualization/control/SimpleEdgeSupport.java   |   86 ++
 .../visualization/control/SimpleVertexSupport.java |   56 +
 .../control/TranslatingGraphMousePlugin.java       |  125 ++
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 .../visualization/control/ViewScalingControl.java  |   40 +
 .../control/ViewTranslatingGraphMousePlugin.java   |  117 ++
 .../ics/jung/visualization/control/package.html    |   20 +
 .../decorators/AbstractVertexShapeTransformer.java |   57 +
 .../ConstantDirectionalEdgeValueTransformer.java   |   68 ++
 .../DirectionalEdgeArrowTransformer.java           |   50 +
 .../jung/visualization/decorators/EdgeShape.java   |  321 ++++++
 .../decorators/EllipseVertexShapeTransformer.java  |   37 +
 .../decorators/GradientEdgePaintTransformer.java   |  107 ++
 .../InterpolatingVertexSizeTransformer.java        |   72 ++
 .../decorators/NumberFormattingTransformer.java    |   42 +
 .../decorators/ParallelEdgeShapeTransformer.java   |   40 +
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 .../decorators/SettableVertexShapeTransformer.java |   29 +
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 .../decorators/VertexIconShapeTransformer.java     |  116 ++
 .../ics/jung/visualization/decorators/package.html |   20 +
 .../layout/BoundingRectangleCollector.java         |   86 ++
 .../layout/BoundingRectanglePaintable.java         |   56 +
 .../jung/visualization/layout/CachingLayout.java   |   69 ++
 .../visualization/layout/LayoutChangeListener.java |    7 +
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 .../visualization/layout/LayoutTransition.java     |   57 +
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 .../visualization/layout/PersistentLayoutImpl.java |  173 +++
 .../uci/ics/jung/visualization/layout/package.html |   20 +
 .../edu/uci/ics/jung/visualization/package.html    |   19 +
 .../visualization/picking/AbstractPickedState.java |   44 +
 .../picking/ClosestShapePickSupport.java           |  141 +++
 .../picking/LayoutLensShapePickSupport.java        |  202 ++++
 .../visualization/picking/MultiPickedState.java    |   82 ++
 .../ics/jung/visualization/picking/PickedInfo.java |   23 +
 .../jung/visualization/picking/PickedState.java    |   48 +
 .../visualization/picking/RadiusPickSupport.java   |   98 ++
 .../visualization/picking/ShapePickSupport.java    |  472 ++++++++
 .../picking/ViewLensShapePickSupport.java          |  233 ++++
 .../ics/jung/visualization/picking/package.html    |   19 +
 .../renderers/BasicEdgeArrowRenderingSupport.java  |  203 ++++
 .../renderers/BasicEdgeLabelRenderer.java          |  113 ++
 .../visualization/renderers/BasicEdgeRenderer.java |  293 +++++
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 .../renderers/BasicVertexLabelRenderer.java        |  202 ++++
 .../renderers/BasicVertexRenderer.java             |  136 +++
 .../renderers/CachingEdgeRenderer.java             |  180 +++
 .../visualization/renderers/CachingRenderer.java   |   15 +
 .../renderers/CachingVertexRenderer.java           |   77 ++
 .../renderers/CenterEdgeArrowRenderingSupport.java |  158 +++
 .../jung/visualization/renderers/Checkmark.java    |   63 +
 .../renderers/DefaultEdgeLabelRenderer.java        |  228 ++++
 .../renderers/DefaultVertexLabelRenderer.java      |  204 ++++
 .../renderers/EdgeArrowRenderingSupport.java       |   63 +
 .../visualization/renderers/EdgeLabelRenderer.java |   45 +
 .../renderers/GradientVertexRenderer.java          |  141 +++
 .../ics/jung/visualization/renderers/Renderer.java |   92 ++
 .../renderers/ReshapingEdgeRenderer.java           |  411 +++++++
 .../renderers/VertexLabelAsShapeRenderer.java      |  121 ++
 .../renderers/VertexLabelRenderer.java             |   41 +
 .../ics/jung/visualization/renderers/package.html  |   19 +
 .../jung/visualization/spatial/AggregateGraph.java |  271 +++++
 .../visualization/spatial/FastRenderingGraph.java  |  315 +++++
 .../visualization/spatial/FastRenderingLayout.java |   74 ++
 .../visualization/subLayout/GraphCollapser.java    |  189 +++
 .../visualization/subLayout/TreeCollapser.java     |   53 +
 .../ics/jung/visualization/subLayout/package.html  |   19 +
 .../transform/AbstractLensSupport.java             |  185 +++
 .../visualization/transform/AffineTransformer.java |  273 +++++
 .../transform/BidirectionalTransformer.java        |   36 +
 .../transform/HyperbolicTransformer.java           |  120 ++
 .../visualization/transform/LayoutLensSupport.java |   88 ++
 .../jung/visualization/transform/LensSupport.java  |   29 +
 .../visualization/transform/LensTransformer.java   |  175 +++
 .../transform/MagnifyTransformer.java              |  146 +++
 .../transform/MutableAffineTransformer.java        |  218 ++++
 .../transform/MutableTransformer.java              |   67 ++
 .../transform/MutableTransformerDecorator.java     |  151 +++
 .../ics/jung/visualization/transform/package.html  |   19 +
 .../transform/shape/Graphics2DWrapper.java         |  674 +++++++++++
 .../transform/shape/GraphicsDecorator.java         |   50 +
 .../shape/HyperbolicShapeTransformer.java          |  226 ++++
 .../visualization/transform/shape/Intersector.java |  116 ++
 .../transform/shape/MagnifyIconGraphics.java       |   85 ++
 .../transform/shape/MagnifyImageLensSupport.java   |  106 ++
 .../transform/shape/MagnifyShapeTransformer.java   |  271 +++++
 .../transform/shape/ShapeFlatnessTransformer.java  |   35 +
 .../transform/shape/ShapeTransformer.java          |   34 +
 .../shape/TransformingFlatnessGraphics.java        |   62 +
 .../transform/shape/TransformingGraphics.java      |  150 +++
 .../transform/shape/ViewLensSupport.java           |   93 ++
 .../visualization/transform/shape/package.html     |   19 +
 .../uci/ics/jung/visualization/util/Animator.java  |   82 ++
 .../ics/jung/visualization/util/ArrowFactory.java  |   65 ++
 .../uci/ics/jung/visualization/util/Caching.java   |   32 +
 .../visualization/util/ChangeEventSupport.java     |   42 +
 .../util/DefaultChangeEventSupport.java            |   79 ++
 .../visualization/util/GeneralPathAsString.java    |   51 +
 .../jung/visualization/util/ImageShapeUtils.java   |  105 ++
 .../ics/jung/visualization/util/LabelWrapper.java  |   87 ++
 .../util/PredicatedParallelEdgeIndexFunction.java  |  152 +++
 .../visualization/util/VertexShapeFactory.java     |  224 ++++
 .../uci/ics/jung/visualization/util/package.html   |   19 +
 jung-visualization/src/site/site.xml               |   14 +
 .../BasicVisualizationServerTest.java              |   23 +
 .../ics/jung/visualization/TestImageShaper.java    |   55 +
 .../control/TestCrossoverScalingControl.java       |   76 ++
 pom.xml                                            |  264 +++++
 tools/deploy_snapshots.sh                          |   13 +
 tools/mvn-deploy.sh                                |   21 +
 tools/settings.xml                                 |    9 +
 529 files changed, 70163 insertions(+)
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