[med-svn] [falcon] 06/15: Update and refresh patches

[Afif Elghraoui]

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afif pushed a commit to branch master
in repository falcon.

commit 353e4331d5d11204715854b3245be23f414274a5
Author: Afif Elghraoui <afif at debian.org>
Date:   Sat Dec 16 01:46:09 2017 -0500

    Update and refresh patches
---
 debian/patches/build-system.patch   | 2 +-
 debian/patches/versioned-deps.patch | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/debian/patches/build-system.patch b/debian/patches/build-system.patch
index 61f6335..c2d1bf6 100644
--- a/debian/patches/build-system.patch
+++ b/debian/patches/build-system.patch
@@ -50,7 +50,7 @@ Last-Update: 2016-11-26
  	@echo 'Try "make run-foo" for any sub-dir of run/.'
 -run-%: setup-%
 +run-%:
- 	cd run/$*; fc_run.py fc_run.cfg logging.ini
+ 	cd run/$*; rm -rf 0-rawreads/ 1-preads_ovl/ 2-asm-falcon/; ls -l; fc_run.py fc_run.cfg logging.ini
 +clean-%:
 +	${MAKE} -C run/$* clean
  setup-%:
diff --git a/debian/patches/versioned-deps.patch b/debian/patches/versioned-deps.patch
index 8854a1b..fb64f92 100644
--- a/debian/patches/versioned-deps.patch
+++ b/debian/patches/versioned-deps.patch
@@ -14,7 +14,7 @@ Last-Update: 2016-06-22
 +        "networkx >=1.7",
          #"logging_tree",
          #"pbcore >= 0.6.3",
-         ]
+         #"pypeFLOW", # We exclude pypeFLOW because it is not needed for the unit-tests.
 --- falcon.orig/pypeFLOW/setup.py
 +++ falcon/pypeFLOW/setup.py
 @@ -14,7 +14,7 @@

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