[med-svn] [bowtie] 02/06: Update upstream source from tag 'upstream/1.2.2+dfsg'

[Alex Mestiashvili]

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malex-guest pushed a commit to branch master
in repository bowtie.

commit 73fe817572bdcd44790931dbecd00c29ef1a723a
Merge: 76ef974 0e7d77e
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date:   Sat Dec 16 18:55:13 2017 +0100

    Update upstream source from tag 'upstream/1.2.2+dfsg'
    
    Update to upstream version '1.2.2+dfsg'
    with Debian dir ea1094f7a44f5f9fdeed83f2ffe54dcc1629365d

 MANUAL                      |  38 ++++++------
 Makefile                    |   9 ++-
 NEWS                        |  12 ++++
 VERSION                     |   2 +-
 bowtie                      |   8 ++-
 doc/manual.html             |  44 ++++++-------
 doc/website/manual.ssi      |  46 +++++++-------
 doc/website/old_news.ssi    |  38 ++++++++++++
 doc/website/recent_news.ssi |  53 +++++-----------
 doc/website/rhsidebar.ssi   |   4 +-
 ebwt_search.cpp             | 146 +++++++++++++++++++++++---------------------
 multikey_qsort.h            |   3 -
 12 files changed, 213 insertions(+), 190 deletions(-)

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