[med-svn] [pcma] 09/10: Update upstream source from tag 'upstream/2.0+20040626'

[Andreas Tille]

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tille pushed a commit to branch master
in repository pcma.

commit 503664b8043c962f5a8f06d69d748434f571d59f
Merge: b7777fe c29ae55
Author: Andreas Tille <tille at debian.org>
Date:   Mon Dec 18 14:02:22 2017 +0100

    Update upstream source from tag 'upstream/2.0+20040626'
    
    Update to upstream version '2.0+20040626'
    with Debian dir b6f8a74cea4dda07a0cd45c2a6a471adc9d09d4c

 README                        |  123 ++
 README_clustalw               |  240 +++
 alcomp2.c                     | 3382 +++++++++++++++++++++++++++++++++
 alnscore.c                    |  114 ++
 amenu.c                       | 1298 +++++++++++++
 blosum62.h                    |   47 +
 calcgapcoeff.c                |  497 +++++
 calcprf1.c                    |   99 +
 calcprf2.c                    |   73 +
 calctree.c                    | 1264 +++++++++++++
 dayhoff.h                     |   45 +
 example/1aboA_ref2.dnd        |   40 +
 example/1aboA_ref2.fa         |   30 +
 example/1aboA_ref2.pcma50.aln |   36 +
 example/alnlist               |    4 +
 example/alnlist.aln           |   70 +
 example/alnlist.dnd           |    4 +
 example/ggdef1.aln            |   23 +
 example/ggdef2.aln            |   26 +
 example/ggdef3.aln            |   20 +
 example/pcma_command          |    7 +
 gcgcheck.c                    |   15 +
 general.h                     |   50 +
 interface.c                   | 4124 +++++++++++++++++++++++++++++++++++++++++
 lib_extension.c               |  136 ++
 lib_generation.c              |  348 ++++
 lsim1.c                       | 1258 +++++++++++++
 makefile                      |   60 +
 malign.c                      |  924 +++++++++
 matrices.h                    |  852 +++++++++
 new.h                         |   58 +
 pairalign.c                   |  818 ++++++++
 param.h                       |  381 ++++
 pcma.c                        |  123 ++
 pcma.h                        |  310 ++++
 prfalign.c                    | 1153 ++++++++++++
 prfalign1.c                   | 1349 ++++++++++++++
 prfalign2.c                   | 1267 +++++++++++++
 prfalignabs.c                 |  665 +++++++
 random.c                      |   81 +
 readmat.c                     |  477 +++++
 sequence.c                    | 1705 +++++++++++++++++
 showpair.c                    |  489 +++++
 subtrees.c                    |   49 +
 trees.c                       | 1618 ++++++++++++++++
 util.c                        |  405 ++++
 46 files changed, 26157 insertions(+)

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