[med-svn] [phyloviz-core] 01/14: Inject relevant machine-readable metadata for phyloviz-core, other plugins will follow once the packaging stuff is finished

[Andreas Tille]

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tille pushed a commit to branch master
in repository phyloviz-core.

commit 3fa06494c491c6a14661b839dc219e585743d6d0
Author: Andreas Tille <tille at debian.org>
Date:   Wed Nov 7 11:19:22 2012 +0000

    Inject relevant machine-readable metadata for phyloviz-core, other plugins will follow once the packaging stuff is finished
---
 debian/changelog     |  5 +++++
 debian/compat        |  1 +
 debian/control       | 33 +++++++++++++++++++++++++++++++++
 debian/rules         |  9 +++++++++
 debian/source/format |  1 +
 debian/watch         |  2 ++
 6 files changed, 51 insertions(+)

diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..8491f8c
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+phyloviz-core (0.0.20111121-1) unstable; urgency=low
+
+  * Initial release (Closes: #<bug>)
+
+ -- Andreas Tille <tille at debian.org>  Wed, 07 Nov 2012 12:07:35 +0100
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..fbb1ef0
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,33 @@
+Source: phyloviz-core
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 9), javahelper (>=0.25), default-jdk, ant
+Standards-Version: 3.9.3
+Homepage: http://www.phyloviz.net
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/phyloviz/core/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/phyloviz/core/trunk/
+
+Package: phyloviz-core
+Architecture: all
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: phylogenetic inference and data visualization for sequence based typing methods
+ Phyloviz allows the analysis of sequence-based typing methods that
+ generate allelic profiles and their associated epidemiological data.
+ .
+ For representing the possible evolutionary relationships between
+ strains identified by allelic profiles it uses the goeBURST algorithm, a
+ refinement of eBURST algorithm proposed by Feil et al., and its
+ expansion to generate a complete minimum spanning tree (MST).
+ .
+ Phyloviz is being developed in a modular way to allow its expansion
+ with novel data analysis algorithms and new visualization modules.
+ .
+ Capabilities
+  * Modularity allows the creation of plugins to analyse different types of data
+  * Allows the visualization of data overlaid onto goeBURST and MST results
+  * Confidence assessment of each link in the graph
+  * Query the data and see the query results directly onto the graphs
+  * Search your data set using regular expressions to select what to display
+  * Export the results as images in various formats: eps, png, gif, pdf, etc
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..bfd7521
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,9 @@
+#!/usr/bin/make -f
+
+# DH_VERBOSE := 1
+
+%:
+	dh $@ --with javahelper
+
+#get-orig-source:
+#	. debian/get-orig-source
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..6b61501
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,2 @@
+# version=3
+# currently upstream has no proper versioning

-- 
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