[med-svn] [profit] 09/11: Update upstream source from tag 'upstream/3.1'

[Andreas Tille]

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tille pushed a commit to branch master
in repository profit.

commit 07ab1d9f5e0531eb7ee0fab4e5d887664bc08526
Merge: dc25729 9678557
Author: Andreas Tille <tille at debian.org>
Date:   Mon Dec 18 20:55:32 2017 +0100

    Update upstream source from tag 'upstream/3.1'
    
    Update to upstream version '3.1'
    with Debian dir e7d383b654e1d9aa42ddc9b683cc94f77f37afdf

 00Read.Me                       |  247 ++
 COPYING.DOC                     |   48 +
 DOS.txt                         |  233 ++
 HISTORY                         |  254 ++
 INSTALL                         |  220 ++
 ProFit.help                     |  867 ++++++
 doc/Makefile                    |   25 +
 doc/ProFit.css                  |   52 +
 doc/ProFit.pdf                  |  Bin 0 -> 194298 bytes
 doc/ProFit.tex                  | 1626 +++++++++++
 mdm78.mat                       |   26 +
 src/Makefile                    |   62 +
 src/Makefile_dos                |   68 +
 src/NWAlign.c                   | 2344 +++++++++++++++
 src/NWAlign.p                   |   33 +
 src/ProFit.h                    |  343 +++
 src/bioplib/00READ.ME           |   11 +
 src/bioplib/ApMatPDB.c          |   96 +
 src/bioplib/AtomNameMatch.c     |  265 ++
 src/bioplib/COPYING.DOC         |  170 ++
 src/bioplib/CopyPDB.c           |   96 +
 src/bioplib/CreateRotMat.c      |  128 +
 src/bioplib/DupePDB.c           |  120 +
 src/bioplib/FindNextResidue.c   |  122 +
 src/bioplib/FindZonePDB.c       |  237 ++
 src/bioplib/FreeStringList.c    |  117 +
 src/bioplib/GetPDBChainLabels.c |  135 +
 src/bioplib/GetWord.c           |  261 ++
 src/bioplib/IndexPDB.c          |  108 +
 src/bioplib/KillLeadSpaces.c    |  102 +
 src/bioplib/LegalAtomSpec.c     |  100 +
 src/bioplib/MatMult33_33.c      |   98 +
 src/bioplib/MatMult3_33.c       |   91 +
 src/bioplib/MathType.h          |   74 +
 src/bioplib/OpenFile.c          |  158 +
 src/bioplib/PDB2Seq.c           |  251 ++
 src/bioplib/ParseRes.c          |  233 ++
 src/bioplib/ReadPDB.c           | 1074 +++++++
 src/bioplib/ReadPIR.c           |  445 +++
 src/bioplib/SelAtPDB.c          |  186 ++
 src/bioplib/StoreString.c       |  160 +
 src/bioplib/StringToUpper.c     |  108 +
 src/bioplib/SysDefs.h           |   80 +
 src/bioplib/TranslatePDB.c      |   86 +
 src/bioplib/WholePDB.c          |  335 +++
 src/bioplib/WindIO.c            |  352 +++
 src/bioplib/WindIO.h            |   60 +
 src/bioplib/WritePDB.c          |  174 ++
 src/bioplib/aalist.c            |  432 +++
 src/bioplib/aalist.h            |   87 +
 src/bioplib/align.c             | 1327 +++++++++
 src/bioplib/angle.c             |  148 +
 src/bioplib/angle.h             |   80 +
 src/bioplib/array.h             |   73 +
 src/bioplib/array2.c            |  154 +
 src/bioplib/chindex.c           |  110 +
 src/bioplib/countchar.c         |  108 +
 src/bioplib/fit.c               |  373 +++
 src/bioplib/fit.h               |   58 +
 src/bioplib/fsscanf.c           |  344 +++
 src/bioplib/fsscanf.h           |   67 +
 src/bioplib/general.h           |  111 +
 src/bioplib/help.c              |  323 ++
 src/bioplib/help.h              |   51 +
 src/bioplib/macros.h            |  483 +++
 src/bioplib/matrix.h            |   72 +
 src/bioplib/openorpipe.c        |  147 +
 src/bioplib/padterm.c           |  103 +
 src/bioplib/parse.c             |  467 +++
 src/bioplib/parse.h             |  116 +
 src/bioplib/pdb.h               |  360 +++
 src/bioplib/port.h              |   99 +
 src/bioplib/seq.h               |  122 +
 src/bioplib/throne.c            |  198 ++
 src/bioplib/upstrncmp.c         |  109 +
 src/fitting.c                   | 3359 +++++++++++++++++++++
 src/fitting.p                   |   66 +
 src/main.c                      | 6159 +++++++++++++++++++++++++++++++++++++++
 src/main.p                      |  123 +
 src/protos.h                    |   87 +
 src/todo.c                      |   95 +
 src/todo.p                      |    2 +
 82 files changed, 28494 insertions(+)

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