[med-svn] [pscan-tfbs] 01/15: Initial shot a pscan http://159.149.109.9/pscan
Andreas Tille
tille at debian.org
Mon Dec 18 20:23:32 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository pscan-tfbs.
commit ef33ae01912e3d8e94e23ba405baa90d62c60311
Author: Steffen Moeller <moeller at debian.org>
Date: Wed May 16 17:38:57 2012 +0000
Initial shot a pscan http://159.149.109.9/pscan
---
debian/README.Debian | 7 ++++++
debian/README.source | 9 ++++++++
debian/changelog | 5 +++++
debian/control | 26 ++++++++++++++++++++++
debian/copyright | 34 +++++++++++++++++++++++++++++
debian/docs | 1 +
debian/examples | 1 +
debian/pscan-dbg.debhelper.log | 49 ++++++++++++++++++++++++++++++++++++++++++
debian/pscan-dbg.substvars | 1 +
debian/pscan.debhelper.log | 49 ++++++++++++++++++++++++++++++++++++++++++
debian/pscan.dirs | 1 +
debian/pscan.doc-base | 10 +++++++++
debian/pscan.install | 1 +
debian/pscan.substvars | 2 ++
debian/rules | 19 ++++++++++++++++
debian/source/format | 1 +
16 files changed, 216 insertions(+)
diff --git a/debian/README.Debian b/debian/README.Debian
new file mode 100644
index 0000000..3b15735
--- /dev/null
+++ b/debian/README.Debian
@@ -0,0 +1,7 @@
+pscan for Debian
+----------------
+
+Pscan depends on a transcription factor binding site description. The
+database "JASPAR" can be downloaded with the Debian 'getData' interface.
+
+ -- Steffen Moeller <moeller at debian.org> Wed, 16 May 2012 18:59:59 +0200
diff --git a/debian/README.source b/debian/README.source
new file mode 100644
index 0000000..bdf2271
--- /dev/null
+++ b/debian/README.source
@@ -0,0 +1,9 @@
+pscan for Debian
+----------------
+
+<this file describes information about the source package, see Debian policy
+manual section 4.14. You WILL either need to modify or delete this file>
+
+
+
+
diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..157d2bb
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+pscan (1.2.1-1) unstable; urgency=low
+
+ * Initial release (Closes: #nnnn) <nnnn is the bug number of your ITP>
+
+ -- Steffen Moeller <moeller at debian.org> Wed, 16 May 2012 18:59:59 +0200
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..425195a
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,26 @@
+Source: pscan
+Section: science
+Priority: extra
+Maintainer: Steffen Moeller <moeller at debian.org>
+Build-Depends: debhelper (>= 8.0.0), libgsl0-dev
+Standards-Version: 3.9.3
+Homepage: http://159.149.109.9/pscan/
+#Vcs-Git: git://git.debian.org/collab-maint/pscan.git
+#Vcs-Browser: http://git.debian.org/?p=collab-maint/pscan.git;a=summary
+
+Package: pscan
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: search for transcription factor binding sites
+ pscan finds Over-represented Transcription Factor Binding Site Motifs
+ in Sequences from Co-Regulated or Co-Expressed Genes.
+
+Package: pscan-dbg
+Architecture: any
+Depends: pscan
+Section: debug
+Description: debug symbols for pscan
+ This package provides symbols as an annotation to the binary code,
+ which helps the communication between users who experience a problem
+ with the package and a developer attempting to understand and fix
+ the issue.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..8bbe8a7
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,34 @@
+
+Actually, this is just guessing. The license still demands clarification.
+
+
+Format: http://dep.debian.net/deps/dep5
+Upstream-Name: pscan
+Source: <url://example.com>
+
+Files: *
+Copyright: 2012 G.Pesole
+ 2012 G.Pavesi <giulio.pavesi at unimi.it>
+ 2012 F.Zambelli <federico.zambelli at unimi.it>
+License: GPL-3.0+
+
+Files: debian/*
+Copyright: 2012 Steffen Moeller <moeller at debian.org>
+License: GPL-3.0+
+
+License: GPL-3.0+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+ .
+ On Debian systems, the complete text of the GNU General
+ Public License version 3 can be found in "/usr/share/common-licenses/GPL-3".
diff --git a/debian/docs b/debian/docs
new file mode 100644
index 0000000..3d755d3
--- /dev/null
+++ b/debian/docs
@@ -0,0 +1 @@
+HELP.txt
diff --git a/debian/examples b/debian/examples
new file mode 100644
index 0000000..438592d
--- /dev/null
+++ b/debian/examples
@@ -0,0 +1 @@
+example_matrix_file.wil
diff --git a/debian/pscan-dbg.debhelper.log b/debian/pscan-dbg.debhelper.log
new file mode 100644
index 0000000..2a9d893
--- /dev/null
+++ b/debian/pscan-dbg.debhelper.log
@@ -0,0 +1,49 @@
+dh_auto_configure
+dh_auto_build
+dh_auto_test
+dh_prep
+dh_installdirs
+dh_auto_install
+dh_install
+dh_installdocs
+dh_installchangelogs
+dh_installexamples
+dh_installman
+dh_installcatalogs
+dh_installcron
+dh_installdebconf
+dh_installemacsen
+dh_installifupdown
+dh_installinfo
+dh_pysupport
+dh_installinit
+dh_installmenu
+dh_installmime
+dh_installmodules
+dh_installlogcheck
+dh_installlogrotate
+dh_installpam
+dh_installppp
+dh_installudev
+dh_installwm
+dh_installxfonts
+dh_installgsettings
+dh_bugfiles
+dh_ucf
+dh_lintian
+dh_gconf
+dh_icons
+dh_perl
+dh_usrlocal
+dh_link
+dh_compress
+dh_fixperms
+dh_strip
+dh_makeshlibs
+dh_shlibdeps
+dh_installdeb
+dh_gencontrol
+dh_md5sums
+dh_builddeb
+dh_builddeb
+dh_builddeb
diff --git a/debian/pscan-dbg.substvars b/debian/pscan-dbg.substvars
new file mode 100644
index 0000000..abd3ebe
--- /dev/null
+++ b/debian/pscan-dbg.substvars
@@ -0,0 +1 @@
+misc:Depends=
diff --git a/debian/pscan.debhelper.log b/debian/pscan.debhelper.log
new file mode 100644
index 0000000..2a9d893
--- /dev/null
+++ b/debian/pscan.debhelper.log
@@ -0,0 +1,49 @@
+dh_auto_configure
+dh_auto_build
+dh_auto_test
+dh_prep
+dh_installdirs
+dh_auto_install
+dh_install
+dh_installdocs
+dh_installchangelogs
+dh_installexamples
+dh_installman
+dh_installcatalogs
+dh_installcron
+dh_installdebconf
+dh_installemacsen
+dh_installifupdown
+dh_installinfo
+dh_pysupport
+dh_installinit
+dh_installmenu
+dh_installmime
+dh_installmodules
+dh_installlogcheck
+dh_installlogrotate
+dh_installpam
+dh_installppp
+dh_installudev
+dh_installwm
+dh_installxfonts
+dh_installgsettings
+dh_bugfiles
+dh_ucf
+dh_lintian
+dh_gconf
+dh_icons
+dh_perl
+dh_usrlocal
+dh_link
+dh_compress
+dh_fixperms
+dh_strip
+dh_makeshlibs
+dh_shlibdeps
+dh_installdeb
+dh_gencontrol
+dh_md5sums
+dh_builddeb
+dh_builddeb
+dh_builddeb
diff --git a/debian/pscan.dirs b/debian/pscan.dirs
new file mode 100644
index 0000000..e772481
--- /dev/null
+++ b/debian/pscan.dirs
@@ -0,0 +1 @@
+usr/bin
diff --git a/debian/pscan.doc-base b/debian/pscan.doc-base
new file mode 100644
index 0000000..bc0bb0d
--- /dev/null
+++ b/debian/pscan.doc-base
@@ -0,0 +1,10 @@
+Document: pscan
+Title: Debian pscan Manual
+Author: G.Pesole,
+ G.Pavesi <giulio.pavesi at unimi.it>,
+ F.Zambelli <federico.zambelli at unimi.it>
+Abstract: The document resembles a UNIX man page.
+Section: science
+
+Format: text
+Files: /usr/share/doc/pscan/HELP.txt.gz
diff --git a/debian/pscan.install b/debian/pscan.install
new file mode 100644
index 0000000..13010f5
--- /dev/null
+++ b/debian/pscan.install
@@ -0,0 +1 @@
+pscan /usr/bin
diff --git a/debian/pscan.substvars b/debian/pscan.substvars
new file mode 100644
index 0000000..18f3275
--- /dev/null
+++ b/debian/pscan.substvars
@@ -0,0 +1,2 @@
+shlibs:Depends=libc6 (>= 2.2.5), libgcc1 (>= 1:4.1.1), libgsl0ldbl (>= 1.9), libstdc++6 (>= 4.2.1)
+misc:Depends=
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..fa59010
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,19 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+# Sample debian/rules that uses debhelper.
+# This file was originally written by Joey Hess and Craig Small.
+# As a special exception, when this file is copied by dh-make into a
+# dh-make output file, you may use that output file without restriction.
+# This special exception was added by Craig Small in version 0.37 of dh-make.
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+%:
+ dh $@
+
+override_dh_auto_build:
+ g++ -g pscan.cpp -o pscan -O3 -lgsl -lgslcblas
+
+override_dh_split:
+ dh_split --dbg-package pscan-dbg
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
--
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