[med-svn] [plastimatch] branch master updated (5b9b1d3 -> 4f819a9)

[Greg Sharp]

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gregsharp-guest pushed a change to branch master
in repository plastimatch.

      from  5b9b1d3   Drop paragraphs of removed libraries, upload to unstable
       new  54bcc61   Add dependency to libdlib18; Remove obsolete entries in Files-Excluded
       new  ad976fb   New upstream version 1.7.0+dfsg.1
       new  1c9d678   Merge tag 'upstream/1.7.0+dfsg.1'
       new  4f819a9   Update changelog; remove obsolete patches

The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 CMakeLists.txt                                     | 531 +++++++--------------
 SuperBuild/External_DCMTK.cmake                    |  35 ++
 SuperBuild/External_ITK.cmake                      |  32 ++
 Testing/CTestCustom.cmake.in                       |   3 +
 cmake/CheckCharSign.cmake                          |   8 +-
 cmake/CheckEpsilon.cmake                           |   8 +-
 cmake/ExternalITK.cmake                            |  36 --
 cmake/FindCUDA_wrap.cmake                          |  12 +-
 cmake/{FindDCMTK.cmake => FindDCMTK_legacy.cmake}  |   0
 cmake/FindDCMTK_wrap.cmake                         |   1 +
 cmake/FindDlib.cmake                               |   6 +-
 cmake/FindOpenMP.cmake                             | 112 +++--
 cmake/HandleITK.cmake                              |  46 ++
 cmake/PlmMacros.cmake                              | 117 ++++-
 cmake/PreventInSourceBuilds.cmake                  |  13 +
 cmake/SuperbuildOptions.cmake                      |  37 ++
 debian/changelog                                   |   9 +
 debian/control                                     |   1 +
 debian/copyright                                   |   5 -
 .../patches/0001-Missing-lconv-in-CMakeLists.patch |  21 -
 ...002-Suppress-failing-proton-dose-testcase.patch |  14 -
 debian/patches/series                              |   2 -
 doc/NOTES.TXT                                      |  11 +-
 doc/man/drr.1                                      |   2 +-
 doc/man/fdk.1                                      |  10 +-
 doc/man/landmark_warp.1                            |   2 +-
 doc/man/plastimatch.1                              |  64 ++-
 src/CMakeLists.txt                                 | 231 ++-------
 src/plastimatch/CHANGELOG.TXT                      |  14 +
 src/plastimatch/CMakeLists.txt                     | 293 +++++++++---
 src/plastimatch/base/CMakeLists.txt                |   2 +-
 src/plastimatch/base/dcmtk_image.cxx               |  24 +-
 src/plastimatch/base/dcmtk_rt_study.cxx            |   6 -
 src/plastimatch/base/parameter_parser.cxx          |  11 +-
 src/plastimatch/base/parameter_parser.h            |  14 +-
 src/plastimatch/base/plm_image.cxx                 |   8 +
 src/plastimatch/base/rpl_volume_lut.cxx            |  32 +-
 src/plastimatch/base/rpl_volume_lut.h              |   4 +-
 src/plastimatch/base/rt_study.cxx                  |  13 +
 src/plastimatch/base/rt_study.h                    |   4 +
 src/plastimatch/base/rt_study_metadata.cxx         |  14 +-
 src/plastimatch/base/rt_study_metadata.h           |   3 +-
 src/plastimatch/cli/CMakeLists.txt                 |   2 +-
 src/plastimatch/cli/pcmd_warp.cxx                  |   8 +
 src/plastimatch/dose/CMakeLists.txt                |   2 +-
 src/plastimatch/dose/dose_volume_functions.cxx     |  36 +-
 src/plastimatch/dose/rt_beam.cxx                   |   6 +
 src/plastimatch/dose/rt_beam.h                     |   1 +
 src/plastimatch/dose/rt_mebs.cxx                   | 212 ++++----
 src/plastimatch/dose/rt_mebs.h                     |   2 +-
 src/plastimatch/dose/rt_plan.cxx                   |   2 +-
 src/plastimatch/opencl/opencl_util.cxx             |   2 +-
 src/plastimatch/qt/CMakeLists.txt                  |  24 +-
 src/plastimatch/reconstruct/CMakeLists.txt         |   2 +-
 src/plastimatch/register/CMakeLists.txt            |   2 +-
 src/plastimatch/script/CMakeLists.txt              |   2 +-
 src/plastimatch/segment/CMakeLists.txt             |   2 +-
 src/plastimatch/segment/mabs.cxx                   |  24 +-
 src/plastimatch/segment/mabs_parms.cxx             |   9 +
 src/plastimatch/standalone/CMakeLists.txt          |  31 +-
 src/plastimatch/standalone/nki2mha_converter.cpp   |  40 +-
 src/plastimatch/sys/CMakeLists.txt                 |   2 +-
 src/plastimatch/test/CMakeLists.txt                |  16 +-
 src/plastimatch/test/cpp_template_test.cxx         |   5 +
 src/plastimatch/test/cuda/CMakeLists.txt           |  14 +-
 src/plastimatch/test/qt_test.cxx                   |  22 +-
 src/plastimatch/util/CMakeLists.txt                |   4 +-
 src/plastimatch/util/rt_study_warp.cxx             |  11 +
 src/plastimatch/util/warp_parms.h                  |   6 +-
 69 files changed, 1303 insertions(+), 997 deletions(-)
 create mode 100644 SuperBuild/External_DCMTK.cmake
 create mode 100755 SuperBuild/External_ITK.cmake
 delete mode 100755 cmake/ExternalITK.cmake
 rename cmake/{FindDCMTK.cmake => FindDCMTK_legacy.cmake} (100%)
 create mode 100644 cmake/HandleITK.cmake
 create mode 100644 cmake/PreventInSourceBuilds.cmake
 create mode 100644 cmake/SuperbuildOptions.cmake
 delete mode 100644 debian/patches/0001-Missing-lconv-in-CMakeLists.patch
 delete mode 100644 debian/patches/0002-Suppress-failing-proton-dose-testcase.patch
 delete mode 100644 debian/patches/series
 mode change 100644 => 100755 src/CMakeLists.txt

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