[med-svn] [plastimatch] 03/04: Merge tag 'upstream/1.7.0+dfsg.1'

[Greg Sharp]

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gregsharp-guest pushed a commit to branch master
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commit 1c9d678fc788c1b2409f5360395f90175bfb5f58
Merge: 54bcc61 ad976fb
Author: Gregory C. Sharp <gregsharp.geo at yahoo.com>
Date:   Mon Dec 18 18:14:54 2017 -0500

    Merge tag 'upstream/1.7.0+dfsg.1'
    
    Upstream version 1.7.0+dfsg.1

 CMakeLists.txt                                    | 531 ++++++++--------------
 SuperBuild/External_DCMTK.cmake                   |  35 ++
 SuperBuild/External_ITK.cmake                     |  32 ++
 Testing/CTestCustom.cmake.in                      |   3 +
 cmake/CheckCharSign.cmake                         |   8 +-
 cmake/CheckEpsilon.cmake                          |   8 +-
 cmake/ExternalITK.cmake                           |  36 --
 cmake/FindCUDA_wrap.cmake                         |  12 +-
 cmake/{FindDCMTK.cmake => FindDCMTK_legacy.cmake} |   0
 cmake/FindDCMTK_wrap.cmake                        |   1 +
 cmake/FindDlib.cmake                              |   6 +-
 cmake/FindOpenMP.cmake                            | 112 +++--
 cmake/HandleITK.cmake                             |  46 ++
 cmake/PlmMacros.cmake                             | 117 ++++-
 cmake/PreventInSourceBuilds.cmake                 |  13 +
 cmake/SuperbuildOptions.cmake                     |  37 ++
 doc/NOTES.TXT                                     |  11 +-
 doc/man/drr.1                                     |   2 +-
 doc/man/fdk.1                                     |  10 +-
 doc/man/landmark_warp.1                           |   2 +-
 doc/man/plastimatch.1                             |  64 ++-
 src/CMakeLists.txt                                | 231 ++--------
 src/plastimatch/CHANGELOG.TXT                     |  14 +
 src/plastimatch/CMakeLists.txt                    | 293 +++++++++---
 src/plastimatch/base/CMakeLists.txt               |   2 +-
 src/plastimatch/base/dcmtk_image.cxx              |  24 +-
 src/plastimatch/base/dcmtk_rt_study.cxx           |   6 -
 src/plastimatch/base/parameter_parser.cxx         |  11 +-
 src/plastimatch/base/parameter_parser.h           |  14 +-
 src/plastimatch/base/plm_image.cxx                |   8 +
 src/plastimatch/base/rpl_volume_lut.cxx           |  32 +-
 src/plastimatch/base/rpl_volume_lut.h             |   4 +-
 src/plastimatch/base/rt_study.cxx                 |  13 +
 src/plastimatch/base/rt_study.h                   |   4 +
 src/plastimatch/base/rt_study_metadata.cxx        |  14 +-
 src/plastimatch/base/rt_study_metadata.h          |   3 +-
 src/plastimatch/cli/CMakeLists.txt                |   2 +-
 src/plastimatch/cli/pcmd_warp.cxx                 |   8 +
 src/plastimatch/dose/CMakeLists.txt               |   2 +-
 src/plastimatch/dose/dose_volume_functions.cxx    |  36 +-
 src/plastimatch/dose/rt_beam.cxx                  |   6 +
 src/plastimatch/dose/rt_beam.h                    |   1 +
 src/plastimatch/dose/rt_mebs.cxx                  | 212 ++++-----
 src/plastimatch/dose/rt_mebs.h                    |   2 +-
 src/plastimatch/dose/rt_plan.cxx                  |   2 +-
 src/plastimatch/opencl/opencl_util.cxx            |   2 +-
 src/plastimatch/qt/CMakeLists.txt                 |  24 +-
 src/plastimatch/reconstruct/CMakeLists.txt        |   2 +-
 src/plastimatch/register/CMakeLists.txt           |   2 +-
 src/plastimatch/script/CMakeLists.txt             |   2 +-
 src/plastimatch/segment/CMakeLists.txt            |   2 +-
 src/plastimatch/segment/mabs.cxx                  |  24 +-
 src/plastimatch/segment/mabs_parms.cxx            |   9 +
 src/plastimatch/standalone/CMakeLists.txt         |  31 +-
 src/plastimatch/standalone/nki2mha_converter.cpp  |  40 +-
 src/plastimatch/sys/CMakeLists.txt                |   2 +-
 src/plastimatch/test/CMakeLists.txt               |  16 +-
 src/plastimatch/test/cpp_template_test.cxx        |   5 +
 src/plastimatch/test/cuda/CMakeLists.txt          |  14 +-
 src/plastimatch/test/qt_test.cxx                  |  22 +-
 src/plastimatch/util/CMakeLists.txt               |   4 +-
 src/plastimatch/util/rt_study_warp.cxx            |  11 +
 src/plastimatch/util/warp_parms.h                 |   6 +-
 63 files changed, 1293 insertions(+), 955 deletions(-)

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