[med-svn] [plastimatch] branch upstream updated (9a47d41 -> ad976fb)

[Greg Sharp]

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gregsharp-guest pushed a change to branch upstream
in repository plastimatch.

      from  9a47d41   New upstream version 1.6.6+dfsg.1
       new  ad976fb   New upstream version 1.7.0+dfsg.1

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 CMakeLists.txt                                    | 531 ++++++++--------------
 SuperBuild/External_DCMTK.cmake                   |  35 ++
 SuperBuild/External_ITK.cmake                     |  32 ++
 Testing/CTestCustom.cmake.in                      |   3 +
 cmake/CheckCharSign.cmake                         |   8 +-
 cmake/CheckEpsilon.cmake                          |   8 +-
 cmake/ExternalITK.cmake                           |  36 --
 cmake/FindCUDA_wrap.cmake                         |  12 +-
 cmake/{FindDCMTK.cmake => FindDCMTK_legacy.cmake} |   0
 cmake/FindDCMTK_wrap.cmake                        |   1 +
 cmake/FindDlib.cmake                              |   6 +-
 cmake/FindOpenMP.cmake                            | 112 +++--
 cmake/HandleITK.cmake                             |  46 ++
 cmake/PlmMacros.cmake                             | 117 ++++-
 cmake/PreventInSourceBuilds.cmake                 |  13 +
 cmake/SuperbuildOptions.cmake                     |  37 ++
 doc/NOTES.TXT                                     |  11 +-
 doc/man/drr.1                                     |   2 +-
 doc/man/fdk.1                                     |  10 +-
 doc/man/landmark_warp.1                           |   2 +-
 doc/man/plastimatch.1                             |  64 ++-
 src/CMakeLists.txt                                | 231 ++--------
 src/plastimatch/CHANGELOG.TXT                     |  14 +
 src/plastimatch/CMakeLists.txt                    | 293 +++++++++---
 src/plastimatch/base/CMakeLists.txt               |   2 +-
 src/plastimatch/base/dcmtk_image.cxx              |  24 +-
 src/plastimatch/base/dcmtk_rt_study.cxx           |   6 -
 src/plastimatch/base/parameter_parser.cxx         |  11 +-
 src/plastimatch/base/parameter_parser.h           |  14 +-
 src/plastimatch/base/plm_image.cxx                |   8 +
 src/plastimatch/base/rpl_volume_lut.cxx           |  32 +-
 src/plastimatch/base/rpl_volume_lut.h             |   4 +-
 src/plastimatch/base/rt_study.cxx                 |  13 +
 src/plastimatch/base/rt_study.h                   |   4 +
 src/plastimatch/base/rt_study_metadata.cxx        |  14 +-
 src/plastimatch/base/rt_study_metadata.h          |   3 +-
 src/plastimatch/cli/CMakeLists.txt                |   2 +-
 src/plastimatch/cli/pcmd_warp.cxx                 |   8 +
 src/plastimatch/dose/CMakeLists.txt               |   2 +-
 src/plastimatch/dose/dose_volume_functions.cxx    |  36 +-
 src/plastimatch/dose/rt_beam.cxx                  |   6 +
 src/plastimatch/dose/rt_beam.h                    |   1 +
 src/plastimatch/dose/rt_mebs.cxx                  | 212 ++++-----
 src/plastimatch/dose/rt_mebs.h                    |   2 +-
 src/plastimatch/dose/rt_plan.cxx                  |   2 +-
 src/plastimatch/opencl/opencl_util.cxx            |   2 +-
 src/plastimatch/qt/CMakeLists.txt                 |  24 +-
 src/plastimatch/reconstruct/CMakeLists.txt        |   2 +-
 src/plastimatch/register/CMakeLists.txt           |   2 +-
 src/plastimatch/script/CMakeLists.txt             |   2 +-
 src/plastimatch/segment/CMakeLists.txt            |   2 +-
 src/plastimatch/segment/mabs.cxx                  |  24 +-
 src/plastimatch/segment/mabs_parms.cxx            |   9 +
 src/plastimatch/standalone/CMakeLists.txt         |  31 +-
 src/plastimatch/standalone/nki2mha_converter.cpp  |  40 +-
 src/plastimatch/sys/CMakeLists.txt                |   2 +-
 src/plastimatch/test/CMakeLists.txt               |  16 +-
 src/plastimatch/test/cpp_template_test.cxx        |   5 +
 src/plastimatch/test/cuda/CMakeLists.txt          |  14 +-
 src/plastimatch/test/qt_test.cxx                  |  22 +-
 src/plastimatch/util/CMakeLists.txt               |   4 +-
 src/plastimatch/util/rt_study_warp.cxx            |  11 +
 src/plastimatch/util/warp_parms.h                 |   6 +-
 63 files changed, 1293 insertions(+), 955 deletions(-)
 create mode 100644 SuperBuild/External_DCMTK.cmake
 create mode 100755 SuperBuild/External_ITK.cmake
 delete mode 100755 cmake/ExternalITK.cmake
 rename cmake/{FindDCMTK.cmake => FindDCMTK_legacy.cmake} (100%)
 create mode 100644 cmake/HandleITK.cmake
 create mode 100644 cmake/PreventInSourceBuilds.cmake
 create mode 100644 cmake/SuperbuildOptions.cmake
 mode change 100644 => 100755 src/CMakeLists.txt

-- 
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