[med-svn] [cwltool] branch master updated (3204427 -> cc25045)

[Andreas Tille]

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tille pushed a change to branch master
in repository cwltool.

      from  3204427   Versioned Build-Depends: python-schema-salad (>= 2.6.20171201034858)
       new  fc0ce1f   New upstream version 1.0.20171221100033
       new  820a924   Update upstream source from tag 'upstream/1.0.20171221100033'
       new  a41b06d   Standards-Version: 4.1.2
       new  67cad50   New Build-Depends: python-ruamel.ordereddict
       new  cc25045   Upload to unstable

The 5 revisions listed above as "new" are entirely new to this
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Summary of changes:
 MANIFEST.in                     |   1 +
 Makefile                        |   6 +-
 PKG-INFO                        |  93 +++++++++++++++++++++------
 README.rst                      |  91 ++++++++++++++++++++------
 cwltool.egg-info/PKG-INFO       |  93 +++++++++++++++++++++------
 cwltool.egg-info/SOURCES.txt    |  16 +++++
 cwltool/draft2tool.py           |  33 ++++++----
 cwltool/load_tool.py            | 110 +++++++++++++++++++++++--------
 cwltool/main.py                 | 139 ++++++++++++++++++++++++++++------------
 cwltool/pack.py                 |  37 +++++++++--
 cwltool/pathmapper.py           |   4 +-
 cwltool/process.py              |  13 +++-
 cwltool/workflow.py             |  14 ++--
 debian/changelog                |   9 +--
 debian/control                  |   5 +-
 setup.cfg                       |   2 +-
 tests/override/echo-job-ov.yml  |   6 ++
 tests/override/echo-job-ov2.yml |   7 ++
 tests/override/echo-job.yml     |   1 +
 tests/override/echo-wf.cwl      |  14 ++++
 tests/override/echo.cwl         |  19 ++++++
 tests/override/ov.yml           |   5 ++
 tests/override/ov2.yml          |   5 ++
 tests/override/ov3.yml          |   5 ++
 tests/test_ext.py               |   1 -
 tests/test_fetch.py             |   8 ++-
 tests/test_override.py          |  66 +++++++++++++++++++
 tests/test_pack.py              | 101 ++++++++++++++++++++++++++---
 tests/wf/count-lines1-wf.cwl    |  25 ++++++++
 tests/wf/formattest-job.json    |   7 ++
 tests/wf/formattest.cwl         |  20 ++++++
 tests/wf/parseInt-tool.cwl      |  16 +++++
 tests/wf/wc-job.json            |   6 ++
 tests/wf/wc-tool.cwl            |  17 +++++
 tests/wf/whale.txt              |  16 +++++
 35 files changed, 837 insertions(+), 174 deletions(-)
 create mode 100644 tests/override/echo-job-ov.yml
 create mode 100644 tests/override/echo-job-ov2.yml
 create mode 100644 tests/override/echo-job.yml
 create mode 100644 tests/override/echo-wf.cwl
 create mode 100644 tests/override/echo.cwl
 create mode 100644 tests/override/ov.yml
 create mode 100644 tests/override/ov2.yml
 create mode 100644 tests/override/ov3.yml
 create mode 100644 tests/test_override.py
 create mode 100644 tests/wf/count-lines1-wf.cwl
 create mode 100644 tests/wf/formattest-job.json
 create mode 100644 tests/wf/formattest.cwl
 create mode 100644 tests/wf/parseInt-tool.cwl
 create mode 100644 tests/wf/wc-job.json
 create mode 100644 tests/wf/wc-tool.cwl
 create mode 100644 tests/wf/whale.txt

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