[med-svn] [qtlreaper] 01/10: Initial packaging for qtlreaper.
Andreas Tille
tille at debian.org
Sat Dec 23 20:52:43 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository qtlreaper.
commit 9d611d3b7a607094e73d1eed1f51f09307312060
Author: Steffen Moeller <moeller at debian.org>
Date: Thu Jul 7 11:33:36 2011 +0000
Initial packaging for qtlreaper.
---
debian/README.Debian | 8 ++++++++
debian/README.source | 9 +++++++++
debian/changelog | 5 +++++
debian/compat | 1 +
debian/control | 27 +++++++++++++++++++++++++++
debian/copyright | 36 ++++++++++++++++++++++++++++++++++++
debian/docs | 1 +
debian/qtlreaper.substvars | 4 ++++
debian/rules | 13 +++++++++++++
debian/source/format | 1 +
debian/watch | 2 ++
11 files changed, 107 insertions(+)
diff --git a/debian/README.Debian b/debian/README.Debian
new file mode 100644
index 0000000..59f187f
--- /dev/null
+++ b/debian/README.Debian
@@ -0,0 +1,8 @@
+qtlreaper for Debian
+--------------------
+
+This package was seeded over a meeting with Rob Williams from upstream
+during the EU SYSGENET workshop in Groningen. It is a preparation for
+getting his http://www.genenetwork.org into the distribution.
+
+ -- Steffen Moeller <moeller at debian.org> Thu, 07 Jul 2011 00:03:09 +0200
diff --git a/debian/README.source b/debian/README.source
new file mode 100644
index 0000000..ffbf042
--- /dev/null
+++ b/debian/README.source
@@ -0,0 +1,9 @@
+qtlreaper for Debian
+--------------------
+
+<this file describes information about the source package, see Debian policy
+manual section 4.14. You WILL either need to modify or delete this file>
+
+
+
+
diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..5fec584
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+qtlreaper (1.1.1-1) unstable; urgency=low
+
+ * Initial release (Closes: #nnnn) <nnnn is the bug number of your ITP>
+
+ -- Steffen Moeller <moeller at debian.org> Thu, 07 Jul 2011 00:03:09 +0200
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..45a4fb7
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+8
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..45436f4
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,27 @@
+Source: qtlreaper
+Section: science
+Priority: extra
+Maintainer: Steffen Moeller <moeller at debian.org>
+Build-Depends: debhelper (>= 8.0.0)
+Standards-Version: 3.9.2
+Homepage: http://qtlreaper.sf.net
+XS-Python-Version: >= 2.5
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/qtlreaper/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/qtlreaper/trunk/
+
+Package: python-reaper
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: QTL analysis for expression data
+ QTL Reaper is software, written in C and compiled as a Python module, for
+ rapidly scanning microarray expression data for QTLs. It is essentially
+ the batch-oriented version of WebQTL. It requires, as input, expression
+ data from members of a set of recombinant inbred lines and genotype
+ information for the same lines. It searches for an association between
+ each expression trait and all genotypes and evaluates that association
+ by a permutation test. For the permutation test, it performs only as
+ many permutations as are necessary to define the empirical P-value to a
+ reasonable precision. It also performs bootstrap resampling to estimate
+ the confidence region for the location of a putative QTL.
+ .
+ The reaper module is used underneath the http://genenetwork.org site.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..8deeae4
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,36 @@
+Format: http://dep.debian.net/deps/dep5
+Upstream-Name: qtlreaper
+Source: <url://example.com>
+
+Files: *
+Copyright: <years> <put author's name and email here>
+ <years> <likewise for another author>
+License: <special license>
+ <Put the license of the package here indented by 1 space>
+ <This follows the format of Description: lines in control file>
+ .
+ <Including paragraphs>
+
+# If you want to use GPL v2 or later for the /debian/* files use
+# the following clauses, or change it to suit. Delete these two lines
+Files: debian/*
+Copyright: 2011 Steffen Moeller <moeller at debian.org>
+License: GPL-2+
+ This package is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>
+ .
+ On Debian systems, the complete text of the GNU General
+ Public License version 2 can be found in "/usr/share/common-licenses/GPL-2".
+
+# Please also look if there are files or directories which have a
+# different copyright/license attached and list them here.
diff --git a/debian/docs b/debian/docs
new file mode 100644
index 0000000..d72c1f8
--- /dev/null
+++ b/debian/docs
@@ -0,0 +1 @@
+whatsnew.txt
diff --git a/debian/qtlreaper.substvars b/debian/qtlreaper.substvars
new file mode 100644
index 0000000..2ca9d24
--- /dev/null
+++ b/debian/qtlreaper.substvars
@@ -0,0 +1,4 @@
+python:Versions=2.6, 2.7
+python:Depends=python2.6 | python2.7, python (>= 2.6), python (<< 2.8)
+shlibs:Depends=libc6 (>= 2.2.5)
+misc:Depends=
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..2ebce13
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,13 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+# Sample debian/rules that uses debhelper.
+# This file was originally written by Joey Hess and Craig Small.
+# As a special exception, when this file is copied by dh-make into a
+# dh-make output file, you may use that output file without restriction.
+# This special exception was added by Craig Small in version 0.37 of dh-make.
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+%:
+ dh $@ --with python2
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..93633db
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,2 @@
+version=3
+http://sf.net/qtlreaper/qtlreaper-(.*)\.tar\.gz
--
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