[med-svn] [repeatmasker] 01/07: Inject some rudimentary (not tested) packaging for repeatmasker
Andreas Tille
tille at debian.org
Sun Dec 24 13:51:29 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository repeatmasker.
commit 3f6149709475336ded0bfb4cd565378e6641ab97
Author: Andreas Tille <tille at debian.org>
Date: Tue Feb 2 15:37:50 2016 +0000
Inject some rudimentary (not tested) packaging for repeatmasker
---
debian/changelog | 5 ++
debian/compat | 1 +
debian/control | 25 ++++++++
debian/copyright | 177 +++++++++++++++++++++++++++++++++++++++++++++++++++
debian/rules | 5 ++
debian/source/format | 1 +
debian/watch | 4 ++
7 files changed, 218 insertions(+)
diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..4f61191
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+repeatmasker (4.0.6-1) UNRELEASED; urgency=medium
+
+ * Initial release (Closes: #???)
+
+ -- Andreas Tille <tille at debian.org> Tue, 02 Feb 2016 15:50:26 +0100
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..b500d00
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,25 @@
+Source: repeatmasker
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 9)
+Standards-Version: 3.9.7
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/repeatmasker/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/repeatmasker/trunk/
+Homepage: http://www.repeatmasker.org/
+
+
+Package: repeatmasker
+Architecture: any
+Depends: ${perl:Depends}, ${misc:Depends}
+Description: screen DNA sequences for interspersed repeats
+ RepeatMasker is a program that screens DNA sequences for interspersed
+ repeats and low complexity DNA sequences. The output of the program is
+ a detailed annotation of the repeats that are present in the query
+ sequence as well as a modified version of the query sequence in which
+ all the annotated repeats have been masked (default: replaced by
+ Ns). Sequence comparisons in RepeatMasker are performed by the program
+ cross_match, an efficient implementation of the Smith-Waterman-Gotoh
+ algorithm developed by Phil Green, or by WU-Blast developed by Warren
+ Gish.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..43083d8
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,177 @@
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: RepeatMasker
+Source: http://www.repeatmasker.org/RMDownload.html
+
+Files: *
+Copyright: 2011-2015 Arian Smit <asmit at systemsbiology.org>
+ Robert Hubley <rhubley at systemsbiology.org>
+ Institute for Systems Biology
+License: OpenSoftwareLicense-2.1
+
+Files: debian/*
+Copyright: 2016 Andreas Tille <tille at debian.org>
+License: OpenSoftwareLicense-2.1
+
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diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..d7c469b
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,5 @@
+#!/usr/bin/make -f
+#export DH_VERBOSE = 1
+
+%:
+ dh $@
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..56d7f80
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,4 @@
+version=3
+
+opts=uversionmangle=s/-/./g \
+ http://www.repeatmasker.org/RMDownload.html RepeatMasker-open-(\d[-\d.]+)\.(?:zip|tgz|tbz|txz|(?:tar\.(?:gz|bz2|xz)))
--
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