[med-svn] [btk-core] 12/15: Merge tag 'upstream/0.8.1'
Andreas Tille
tille at debian.org
Sun Dec 24 22:56:56 UTC 2017
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tille pushed a commit to branch master
in repository btk-core.
commit a19bffbf084d223be3f5e831ce3f0f38ce529c93
Merge: 13d3da4 cdd09b1
Author: Andreas Tille <tille at debian.org>
Date: Sun Dec 24 23:37:44 2017 +0100
Merge tag 'upstream/0.8.1'
Upstream version 0.8.1
AUTHORS | 21 +
COPYING | 463 +
ChangeLog | 0
HACKING | 231 +
INSTALL | 105 +
Makefile.am | 7 +
Makefile.in | 428 +
NEWS | 73 +
README | 73 +
acinclude.m4 | 304 +
aclocal.m4 | 1140 ++
btk/Makefile.am | 1 +
btk/Makefile.in | 322 +
btk/core/Makefile.am | 100 +
btk/core/Makefile.in | 630 +
btk/core/algorithms/predicates.hpp | 152 +
btk/core/algorithms/properties.hpp | 89 +
btk/core/algorithms/rmsd.cpp | 134 +
btk/core/algorithms/rmsd.hpp | 647 +
btk/core/algorithms/selections.hpp | 77 +
btk/core/algorithms/transforms.hpp | 212 +
btk/core/atoms/atom.hpp | 279 +
btk/core/atoms/default_atom_dictionary.hpp | 37 +
btk/core/atoms/pdb_atom.hpp | 38 +
btk/core/atoms/pdb_atom_decorator.hpp | 282 +
btk/core/common/assertions.cpp | 70 +
btk/core/common/assertions.hpp | 84 +
btk/core/common/debugging.hpp | 51 +
btk/core/common/exceptions.hpp | 115 +
btk/core/concepts/atom_concept.hpp | 299 +
btk/core/concepts/atom_iterable_concept.hpp | 258 +
btk/core/concepts/atom_iterator_concept.hpp | 94 +
btk/core/concepts/atomic_structure_concept.hpp | 232 +
btk/core/concepts/btk_container_concept.hpp | 49 +
btk/core/concepts/chain_concept.hpp | 49 +
btk/core/concepts/chain_iterable_concept.hpp | 90 +
btk/core/concepts/chain_iterator_concept.hpp | 55 +
btk/core/concepts/chemically_typed_concept.hpp | 324 +
btk/core/concepts/monomer_concept.hpp | 89 +
btk/core/concepts/monomer_iterable_concept.hpp | 90 +
btk/core/concepts/monomer_iterator_concept.hpp | 55 +
btk/core/concepts/polymer_structure_concept.hpp | 87 +
btk/core/concepts/system_concept.hpp | 77 +
btk/core/concepts/type_id_concept.hpp | 47 +
btk/core/concepts/type_system_concept.hpp | 82 +
btk/core/config/btk_config.hpp | 112 +
btk/core/config/btk_core_config.h | 121 +
btk/core/config/config.h.in | 65 +
btk/core/config/depcomp | 436 +
btk/core/config/install-sh | 251 +
btk/core/config/missing | 336 +
btk/core/config/mkinstalldirs | 101 +
btk/core/elements/default_element_dictionary.cpp | 154 +
btk/core/elements/default_element_dictionary.hpp | 50 +
btk/core/elements/element_types.hpp | 200 +
btk/core/io/cached_logger.cpp | 45 +
btk/core/io/cached_logger.hpp | 74 +
btk/core/io/default_type_system.hpp | 84 +
btk/core/io/dictionary.hpp | 207 +
btk/core/io/filter_logger.hpp | 60 +
btk/core/io/logger.cpp | 51 +
btk/core/io/logger.hpp | 114 +
btk/core/io/logger_level.hpp | 124 +
btk/core/io/logger_stream.hpp | 84 +
btk/core/io/logging.hpp | 55 +
btk/core/io/pdb_file_parser.hpp | 765 +
btk/core/io/pdb_system.hpp | 166 +
btk/core/io/type_system.hpp | 97 +
btk/core/io/type_system_proxy.hpp | 133 +
btk/core/math/btk_matrix.hpp | 93 +
btk/core/math/btk_vector.hpp | 99 +
btk/core/math/common_functions.hpp | 76 +
btk/core/math/constants.hpp | 46 +
btk/core/math/linear_algebra.cpp | 149 +
btk/core/math/linear_algebra.hpp | 140 +
btk/core/math/rotation.cpp | 97 +
btk/core/math/rotation.hpp | 115 +
btk/core/math/vector_math.cpp | 74 +
btk/core/math/vector_math.hpp | 115 +
btk/core/molecules/atomic_structure.hpp | 254 +
btk/core/molecules/chain.hpp | 146 +
btk/core/molecules/default_monomer_dictionary.hpp | 34 +
.../molecules/default_structure_dictionary.hpp | 34 +
btk/core/molecules/molecule.hpp | 138 +
btk/core/molecules/monomer.hpp | 181 +
btk/core/molecules/polymer.hpp | 312 +
btk/core/molecules/polymer_structure.hpp | 227 +
btk/core/molecules/system.hpp | 357 +
btk/core/molecules/system_base.hpp | 189 +
btk/core/utility/btk_container.hpp | 198 +
btk/core/utility/btk_sequence.hpp | 111 +
btk/core/utility/chemically_typed_object.hpp | 158 +
btk/core/utility/grouped_element_iterator.hpp | 382 +
btk/core/utility/type_id.hpp | 110 +
btk/core/utility/type_id_traits.hpp | 67 +
configure | 5705 ++++++++
configure.ac | 50 +
debian/changelog | 24 -
debian/compat | 1 -
debian/control | 24 -
debian/copyright | 29 -
debian/docs | 3 -
debian/libbtk-core-dev.examples | 3 -
debian/libbtk-core-dev.install | 2 -
debian/patches/00list | 2 -
debian/patches/100-Makefile.am.dpatch | 16 -
debian/patches/100-btk_core_Makefile.am.dpatch | 31 -
debian/rmsd.1 | 53 -
debian/rules | 94 -
debian/transform_structure.1 | 22 -
debian/watch | 3 -
examples/Makefile.am | 9 +
examples/Makefile.in | 358 +
examples/contact_order.cpp | 87 +
examples/gyration_radius.cpp | 74 +
examples/rmsd.cpp | 306 +
examples/transform_structure.cpp | 86 +
tests/Makefile.am | 45 +
tests/Makefile.in | 516 +
tests/atomic_structure_tests.hpp | 129 +
tests/btk_container_tests.hpp | 173 +
tests/chain_tests.hpp | 42 +
tests/multi_model_test.pdb | 13791 +++++++++++++++++++
tests/polymer_structure_tests.hpp | 113 +
tests/system_tests.hpp | 136 +
tests/test.pdb | 1417 ++
tests/test.short.pdb | 33 +
tests/test_atoms.cpp | 155 +
tests/test_btk_container.cpp | 58 +
tests/test_common.hpp | 59 +
tests/test_dictionary.cpp | 85 +
tests/test_grouped_iterator.cpp | 160 +
tests/test_molecule.cpp | 61 +
tests/test_monomer.cpp | 60 +
tests/test_pdb_output.cpp | 99 +
tests/test_pdb_system.cpp | 231 +
tests/test_polymer.cpp | 32 +
tests/test_system.cpp | 54 +
tests/test_vector_geometry.cpp | 67 +
139 files changed, 40120 insertions(+), 307 deletions(-)
--
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