[med-svn] [libgoby-java] 01/10: When trying to upgrade the package igv I noticed goby which might be worth packaging on its own

[Andreas Tille]

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tille pushed a commit to branch master
in repository libgoby-java.

commit d3ad123f81b28fe743d78e49a16046077e307967
Author: Andreas Tille <tille at debian.org>
Date:   Tue Dec 18 16:41:41 2012 +0000

    When trying to upgrade the package igv I noticed goby which might be worth packaging on its own
---
 debian/changelog     |  5 +++++
 debian/compat        |  1 +
 debian/control       | 28 ++++++++++++++++++++++++++++
 debian/copyright     | 27 +++++++++++++++++++++++++++
 debian/rules         |  6 ++++++
 debian/source/format |  1 +
 debian/watch         |  2 ++
 7 files changed, 70 insertions(+)

diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..3bdb978
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+goby-framework (2.1.1-1) UNRELEASED; urgency=low
+
+  * Initial release (Closes: #<bug>)
+
+ -- Andreas Tille <tille at debian.org>  Tue, 18 Dec 2012 17:11:24 +0100
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..72e7ea6
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,28 @@
+Source: goby-framework
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 9)
+Standards-Version: 3.9.4
+Homepage: <homepage>
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/goby-framework/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/goby-framework/trunk/
+
+Package: libgoby-java
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: store next-generation sequencing data and intermediary analysis results
+ Goby is a next-gen data management framework designed to facilitate the
+ implementation of efficient data analysis pipelines.
+ .
+ Goby provides very efficient file formats to store next-generation
+ sequencing data and intermediary analysis results. Goby 1.x files were
+ compressed with GZip. In Goby 2.0, we introduced novel compression
+ approaches that result in state of the art compression of alignment
+ data. Goby 2.0 files can compress to a few percent of a BAM file and are
+ often smaller than CRAM files.  
+ .
+ Goby also provides utilities that implement common next-gen data
+ computations. We design these utilities to make them relatively easy to
+ use, yet very efficient.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..b3deeae
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,27 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: Goby
+Upstream-Contact: goby-framework at googlegroups.com
+Source: http://chagall.med.cornell.edu/goby/releases/archive/
+        https://github.com/CampagneLaboratory/goby/tags
+
+Files: *
+Copyright: © 20xx-20yy <upstream>
+License: GPL-3
+
+Files: debian/*
+Copyright: © 2012 Andreas Tille <tille at debian.org>
+License: GPL-3
+
+License: GPL-3
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ GNU General Public License for more details.
+ .
+ On Debian systems you can find the full text of the GPL3 at
+ /usr/share/common-licenses/GPL-3
\ No newline at end of file
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..6055261
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,6 @@
+#!/usr/bin/make -f
+
+# DH_VERBOSE := 1
+
+%:
+	dh $@
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..cf9737b
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,2 @@
+version=3
+https://github.com/CampagneLaboratory/goby/tags .*/(\d[\d\.]+)\.tar\.gz

-- 
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