[med-svn] [netepi-analysis] 12/13: Update upstream source from tag 'upstream/0.9.0'
Andreas Tille
tille at debian.org
Tue Dec 26 13:49:30 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository netepi-analysis.
commit 7ed337c73a62632983f7e7862ad0b7cad3a9e333
Merge: 01c43de 78eebf7
Author: Andreas Tille <tille at debian.org>
Date: Tue Dec 26 14:43:39 2017 +0100
Update upstream source from tag 'upstream/0.9.0'
Update to upstream version '0.9.0'
with Debian dir fc1941104ae1aca027bda5dc818043be6eb70ff7
CHANGES | 113 +
LICENSE | 546 ++
MANIFEST.in | 27 +
PKG-INFO | 10 +
README | 439 ++
SOOMv0/Analysis/PopRate.py | 727 +++
SOOMv0/Analysis/__init__.py | 16 +
SOOMv0/Analysis/twobytwo.py | 1336 +++++
SOOMv0/BaseDataset.py | 323 ++
SOOMv0/CachingLoader.py | 246 +
SOOMv0/ChunkingLoader.py | 148 +
SOOMv0/ColTypes/Discrete.py | 332 ++
SOOMv0/ColTypes/Identity.py | 22 +
SOOMv0/ColTypes/RowOrdinal.py | 108 +
SOOMv0/ColTypes/Scalar.py | 99 +
SOOMv0/ColTypes/SearchableText.py | 221 +
SOOMv0/ColTypes/__init__.py | 17 +
SOOMv0/ColTypes/base.py | 569 +++
SOOMv0/CrossTab.py | 323 ++
SOOMv0/Cstats.pyx | 123 +
SOOMv0/DataSourceColumn.py | 128 +
SOOMv0/DataTypes.py | 317 ++
SOOMv0/Dataset.py | 441 ++
SOOMv0/DatasetColumn.py | 55 +
SOOMv0/DatasetSummary.py | 419 ++
SOOMv0/Datasets.py | 137 +
SOOMv0/Describe.py | 64 +
SOOMv0/Filter.py | 486 ++
SOOMv0/Makefile | 25 +
SOOMv0/Plot/README | 56 +
SOOMv0/Plot/__init__.py | 17 +
SOOMv0/Plot/_output.py | 257 +
SOOMv0/Plot/panelfn.py | 119 +
SOOMv0/Plot/plotmethods.py | 337 ++
SOOMv0/Plot/raxis.py | 415 ++
SOOMv0/Plot/rconv.py | 126 +
SOOMv0/Plot/rplot.py | 663 +++
SOOMv0/PlotRegistry.py | 70 +
SOOMv0/PrintDataset.py | 88 +
SOOMv0/Search.py | 236 +
SOOMv0/Soom.py | 195 +
SOOMv0/SourceDataTypes.py | 163 +
SOOMv0/Sources/All.py | 20 +
SOOMv0/Sources/CSV.py | 79 +
SOOMv0/Sources/Columns.py | 48 +
SOOMv0/Sources/DB.py | 81 +
SOOMv0/Sources/__init__.py | 16 +
SOOMv0/Sources/common.py | 206 +
SOOMv0/Stats.py | 1595 ++++++
SOOMv0/SummaryCond.py | 554 ++
SOOMv0/SummaryProp.py | 131 +
SOOMv0/SummaryStats.py | 501 ++
SOOMv0/Timers.py | 59 +
SOOMv0/TransformFN.py | 64 +
SOOMv0/Utils.py | 318 ++
SOOMv0/__init__.py | 57 +
SOOMv0/common.py | 58 +
SOOMv0/interactive_hook.py | 41 +
SOOMv0/soomparse.g | 390 ++
SOOMv0/soomparse.py | 953 ++++
SOOMv0/xvfb_spawn.py | 201 +
SOOMv0/yappsrt.py | 304 ++
TODO | 288 ++
demo/SOOM_demo_data_load.py | 90 +
demo/api_demo.py | 930 ++++
demo/demo.txt | 8474 +++++++++++++++++++++++++++++++
demo/loaders/__init__.py | 16 +
demo/loaders/epitools.py | 283 ++
demo/loaders/make_icd9cm_fmt.py | 114 +
demo/loaders/nhds.py | 699 +++
demo/loaders/nhds_population.py | 201 +
demo/loaders/nhmrc.py | 137 +
demo/loaders/rtfparse.py | 112 +
demo/loaders/syndeath.py | 390 ++
demo/loaders/syndeath_expand.py | 94 +
demo/loaders/urlfetch.py | 76 +
demo/loaders/whopop.py | 194 +
demo/loaders/whotext.py | 96 +
demo/plot_demo.py | 368 ++
demo/rawdata/README_NHMRC.txt | 2 +
demo/rawdata/README_WHO.txt | 18 +
demo/rawdata/aus01stdpop.csv | 19 +
demo/rawdata/aus01stdpop_mf.csv | 37 +
demo/rawdata/nhmrc_grantdata.csv.gz | Bin 0 -> 770619 bytes
demo/rawdata/synthetic_deaths_comp.gz | Bin 0 -> 111642 bytes
demo/rawdata/synthetic_pops.csv.gz | Bin 0 -> 48970 bytes
demo/rawdata/who2000.csv | 38 +
demo/rawdata/who2001.csv | 38 +
demo/rawdata/who2002.csv | 38 +
demo/rawdata/whoreps.csv.gz | Bin 0 -> 274026 bytes
demo/testrunner.py | 144 +
docs/README.searchabletext | 230 +
liccheck.py | 79 +
sandbox/PopRate.py | 110 +
sandbox/cacheloadmeta.py | 51 +
sandbox/ci_bars.py | 446 ++
sandbox/dobson.lst | 134 +
sandbox/dobson.sas | 161 +
sandbox/martinstats.py | 857 ++++
sandbox/poprate.py | 203 +
sandbox/reformat_icd9.py | 54 +
sandbox/sander.py | 286 ++
sandbox/soomload-report.py | 238 +
sandbox/source_bench.py | 32 +
sandbox/summ_measure.py | 81 +
sandbox/twobytwo.output | 2371 +++++++++
sandbox/wordidx.py | 338 ++
setup.py | 42 +
simpleinst/.cvsignore | 2 +
simpleinst/__init__.py | 66 +
simpleinst/config_register.py | 185 +
simpleinst/defaults.py | 25 +
simpleinst/filter.py | 33 +
simpleinst/glob.py | 49 +
simpleinst/install_files.py | 190 +
simpleinst/platform.py | 65 +
simpleinst/pyinstaller.py | 30 +
simpleinst/usergroup.py | 47 +
simpleinst/utils.py | 112 +
soomext/bad.py | 7 +
soomext/blob.c | 409 ++
soomext/blobstore.c | 253 +
soomext/blobstore.h | 44 +
soomext/doc/Makefile | 52 +
soomext/doc/blobstore.tex | 178 +
soomext/doc/copyright.tex | 17 +
soomext/doc/installation.tex | 58 +
soomext/doc/soom.pdf | Bin 0 -> 50274 bytes
soomext/doc/soom.tex | 72 +
soomext/doc/soomarray.tex | 163 +
soomext/doc/soomfunc.tex | 170 +
soomext/doc/storage.dia | Bin 0 -> 1474 bytes
soomext/doc/storage.tex | 244 +
soomext/matest.py | 71 +
soomext/mmaparray.c | 277 +
soomext/setup.py | 43 +
soomext/soomarray.py | 542 ++
soomext/soomfunc.c | 1517 ++++++
soomext/storage.c | 623 +++
soomext/storage.h | 69 +
soomext/test/Makefile | 12 +
soomext/test/all.py | 39 +
soomext/test/soomarraytest.py | 228 +
soomext/test/soomfunctest.py | 313 ++
test.py | 64 +
tests/SAS/Stats_py_test.sas | 436 ++
tests/SAS/indirect_std_check.sas | 335 ++
tests/SAS/summ_higher_order.sas | 321 ++
tests/__init__.py | 16 +
tests/column.py | 335 ++
tests/csv_source.py | 61 +
tests/data/csv_data | 4 +
tests/data/smr_results_37_37_CL0.90.csv | 35 +
tests/data/smr_results_37_37_CL0.99.csv | 35 +
tests/data/smr_results_37_95_CL0.90.csv | 35 +
tests/data/smr_results_37_95_CL0.99.csv | 35 +
tests/data/smr_results_95_37_CL0.90.csv | 35 +
tests/data/smr_results_95_37_CL0.99.csv | 35 +
tests/data/smr_results_95_95_CL0.90.csv | 35 +
tests/data/smr_results_95_95_CL0.99.csv | 35 +
tests/db_source.py | 74 +
tests/filters.py | 649 +++
tests/indirect_std_SAS.py | 176 +
tests/poprate.py | 298 ++
tests/source_datatypes.py | 179 +
tests/stats.py | 2894 +++++++++++
tests/summ.py | 423 ++
tests/summ_higher_order.py | 340 ++
web/install.py | 80 +
web/libsoomexplorer/__init__.py | 16 +
web/libsoomexplorer/colvals.py | 190 +
web/libsoomexplorer/common.py | 64 +
web/libsoomexplorer/condcol.py | 222 +
web/libsoomexplorer/dsparams.py | 177 +
web/libsoomexplorer/fields.py | 735 +++
web/libsoomexplorer/filter.py | 662 +++
web/libsoomexplorer/filterparse.py | 635 +++
web/libsoomexplorer/filterstore.py | 184 +
web/libsoomexplorer/output/__init__.py | 16 +
web/libsoomexplorer/output/base.py | 147 +
web/libsoomexplorer/output/plot.py | 59 +
web/libsoomexplorer/output/table.py | 382 ++
web/libsoomexplorer/output/twobytwo.py | 105 +
web/libsoomexplorer/parameters.py | 83 +
web/libsoomexplorer/paramstore.py | 179 +
web/libsoomexplorer/plotform.py | 606 +++
web/libsoomexplorer/plottypes.py | 456 ++
web/libsoomexplorer/twobytwoparams.py | 213 +
web/libsoomexplorer/undo.py | 105 +
web/libsoomexplorer/workspace.py | 124 +
web/libsoomexplorer/yappsrt.py | 328 ++
web/nea-standalone.py | 90 +
web/nea.py | 583 +++
web/pages/colvalselect.html | 113 +
web/pages/condcolparams.html | 134 +
web/pages/explore.html | 82 +
web/pages/fields.html | 445 ++
web/pages/filter.html | 320 ++
web/pages/macros.html | 123 +
web/pages/newanalysis.html | 42 +
web/pages/output_crosstab.html | 105 +
web/pages/output_dsrows.html | 82 +
web/pages/output_image.html | 25 +
web/pages/output_table.html | 42 +
web/pages/output_twobytwo.html | 138 +
web/pages/params.html | 57 +
web/pages/paramsave.html | 43 +
web/pages/result.html | 56 +
web/pages/start.html | 70 +
web/pages/twobytwoparams.html | 137 +
web/static/Netepi_logo_m.png | Bin 0 -> 1541 bytes
web/static/Netepi_logo_s.png | Bin 0 -> 447 bytes
web/static/add.xcf | Bin 0 -> 2642 bytes
web/static/button-add.png | Bin 0 -> 1010 bytes
web/static/button-del.png | Bin 0 -> 892 bytes
web/static/button-down.png | Bin 0 -> 246 bytes
web/static/button-l.png | Bin 0 -> 955 bytes
web/static/button-r.png | Bin 0 -> 957 bytes
web/static/button-up.png | Bin 0 -> 245 bytes
web/static/button.xcf | Bin 0 -> 3350 bytes
web/static/close.png | Bin 0 -> 314 bytes
web/static/close.xcf | Bin 0 -> 1228 bytes
web/static/copyright.html | 567 +++
web/static/favicon.ico | Bin 0 -> 318 bytes
web/static/help.html | 418 ++
web/static/help.png | Bin 0 -> 2851 bytes
web/static/netepi-2x2.svg | 112 +
web/static/style.css | 610 +++
web/static/target.png | Bin 0 -> 822 bytes
web/static/target.xcf | Bin 0 -> 2211 bytes
230 files changed, 58096 insertions(+)
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