[med-svn] [python-burrito-fillings] 11/13: Update upstream source from tag 'upstream/0.1.1'

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository python-burrito-fillings.

commit 8294bae2444f23efc298c89b82b67a8d7ca1a47a
Merge: 138bb53 119ac5c
Author: Andreas Tille <tille at debian.org>
Date:   Tue Dec 26 23:15:54 2017 +0100

    Update upstream source from tag 'upstream/0.1.1'
    
    Update to upstream version '0.1.1'
    with Debian dir 729f2441253fed132238a8ba6ae3e372b0c185f5

 .gitignore                             |   39 +
 CHANGELOG.md                           |   11 +
 COPYING.txt                            |   27 +
 README.md                              |   11 +
 bfillings/__init__.py                  |   11 +
 bfillings/align.py                     |   40 +
 bfillings/blast.py                     | 1243 ++++++++++++++++
 bfillings/blat.py                      |  422 ++++++
 bfillings/bwa.py                       |  762 ++++++++++
 bfillings/cd_hit.py                    |  343 +++++
 bfillings/clearcut.py                  |  401 +++++
 bfillings/clustalw.py                  |  724 +++++++++
 bfillings/denoiser.py                  |   25 +
 bfillings/fastq_join.py                |  229 +++
 bfillings/fasttree.py                  |  162 ++
 bfillings/fasttree_v1.py               |  145 ++
 bfillings/formatdb.py                  |  239 +++
 bfillings/infernal.py                  | 1571 ++++++++++++++++++++
 bfillings/mafft.py                     |  470 ++++++
 bfillings/mothur.py                    |  589 ++++++++
 bfillings/muscle_v38.py                |  777 ++++++++++
 bfillings/parsinsert.py                |   92 ++
 bfillings/pplacer.py                   |  201 +++
 bfillings/raxml_v730.py                |  875 +++++++++++
 bfillings/rdp_classifier.py            |  589 ++++++++
 bfillings/rtax.py                      |  293 ++++
 bfillings/seqprep.py                   |  351 +++++
 bfillings/sortmerna_v2.py              |  544 +++++++
 bfillings/sumaclust_v1.py              |  173 +++
 bfillings/swarm_v127.py                |  299 ++++
 bfillings/tests/__init__.py            |    9 +
 bfillings/tests/test_blast.py          |  256 ++++
 bfillings/tests/test_blat.py           |  346 +++++
 bfillings/tests/test_bwa.py            |  319 ++++
 bfillings/tests/test_cd_hit.py         |  214 +++
 bfillings/tests/test_clearcut.py       |  255 ++++
 bfillings/tests/test_clustalw.py       |  627 ++++++++
 bfillings/tests/test_fasttree.py       |  182 +++
 bfillings/tests/test_fasttree_v1.py    |  174 +++
 bfillings/tests/test_formatdb.py       |  233 +++
 bfillings/tests/test_infernal.py       |  620 ++++++++
 bfillings/tests/test_mafft.py          |  132 ++
 bfillings/tests/test_mothur.py         |  315 ++++
 bfillings/tests/test_muscle_v38.py     |  286 ++++
 bfillings/tests/test_parsinsert.py     |  138 ++
 bfillings/tests/test_pplacer.py        |  254 ++++
 bfillings/tests/test_raxml_v730.py     |  236 +++
 bfillings/tests/test_rdp_classifier.py |  398 +++++
 bfillings/tests/test_rtax.py           |  228 +++
 bfillings/tests/test_sortmerna_v2.py   |  855 +++++++++++
 bfillings/tests/test_sumaclust_v1.py   |  259 ++++
 bfillings/tests/test_swarm_v127.py     |  190 +++
 bfillings/tests/test_uclust.py         |  758 ++++++++++
 bfillings/tests/test_usearch.py        | 2000 +++++++++++++++++++++++++
 bfillings/tests/test_vsearch.py        | 1686 +++++++++++++++++++++
 bfillings/uclust.py                    |  606 ++++++++
 bfillings/usearch.py                   | 2547 ++++++++++++++++++++++++++++++++
 bfillings/vsearch.py                   |  575 +++++++
 setup.py                               |   46 +
 59 files changed, 26402 insertions(+)

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