[med-svn] [vienna-rna] branch master created (now 9eb92af)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository vienna-rna.

        at  9eb92af   Moved packaging from SVN to Git

This branch includes the following new commits:

       new  22d4d68   Seed attempt to build the Vienna RNA package, which is much respected world-wide and ... non-free. I'll do the ITP tomorrow.
       new  a2c98b4   * Updated ITP for vienna-rna * s/XS-Vcs/Vcs/ in control file
       new  a86b195   * Using DM-Upload-Allowed instead of XS-DM-Upload-Allowed * Added ?rev=0&sc=0 to Vcs-Browser fields * Sanitized Vcs-* fields
       new  a8906bd   Updating Standards-Version to 3.7.3
       new  73140d9   removed boilerplate *.ex and *.EX files
       new  47bd153   Syncing. The latest upstream version now imposes some additional efforts to get it packaged.
       new  72c3072   initial release vienna-rna
       new  be6b3a6   Misc.
       new  5037ba8   some fixes ( removed readseq , excluded ling2 , both tools are packaged as standalone packages)
       new  7460b46   minor changes to rules and control files ( fixing lintian warnings )
       new  36e910a   fixing lintian warnings and errors.
       new  d97338c   fixing file extensions *.pl moving Fold to examples .
       new  f9a4ffd   fixing manual pages again
       new  d85447b   renaming *.pl  fixing linitian warnings.
       new  0f8f586   manpage one more time
       new  aa1bee4   Add format which seems to be forgotten in the commit
       new  495f5d7   perl
       new  9b5d56d   cleanup
       new  71134a9    by default perl modules installed in /usr/local (site) and not vendor /usr/{lib,share}/perl5.
       new  f96ea93   
       new  3a6f9fe   cleanup of lintian errors .
       new  aef121f   copyright
       new  20d8902   Added Section doc for vianna-rna-doc
       new  9e1b56d   
       new  c5acc77   fixing linitan's warnings
       new  de99b52   RNAlib.texinfo patch
       new  0ce079f   
       new  4739e8a   
       new  7fe6dcb   Remove not applicable patch
       new  3ac2985   Some minor changes to fix lintian warnings
       new  20fd7d0   oldfashioned rules , but working
       new  e374e1b   missing header patches
       new  0f81e47   rules
       new  d88e24c   
       new  2e8e1bd   fixing /usr/share/info/dir.gz by deleting it from debian/rules.
       new  9d4c0fb   Hi Alex, I tried to make the debian/rules file with the short debhelper notation doing the same as the current debian/rules file.  Just roll back the commit in case you think this is a bad idea (and hit me with a stick about this :-)) I was not able to verify whether the package finally compiles because of further source code problems with wrong / missing includes. Hope this helps.
       new  a02359e   Fixed Build-Depends; avoid configuration of unused libg2; added different doc formats; fixed clean target to not remove files which exist in orig.tar.gz; configure --with-cluster, lintian overrides
       new  e8e9407   Added Build-Depends for creating pdf from texinfo
       new  9fd3df1   Several documentation issues
       new  3e3cb01   Continue working on the docs via help2man, perldoc and texinfo
       new  ac00bcd   Fix texinfo properly
       new  02ba5c3   Finally get valid manpages out of perldoc
       new  535373a   Do not link to non-existing texinfo pages in manuals
       new  2e51a2a   added 2 manual pages for Cluster (AnalyseDists.1 AnalyseSeqs.1 ) added lintian-ovverides for this 2 pages .
       new  71418ab   Alex's code to obtain the manpages via perldoc is way better than mine - I stupidly overlooked the proper option, thanks for pointing this up Alex!; added --no-info to help2man to not point to not existing texinfo page
       new  a843238   RNAforester copyright in pending state .
       new  0d256a7   RNAforester has another upstream maintainer , also merged libg2 patches.
       new  5be7597   some cleanup in patches , some are merged , others renamed.
       new  596018e   copyright for RNAforester.
       new  bc43c84   Fold was moved to examples
       new  f60332e   Added copyright for naview.c , and Section is changed to non-free , b2ct.1 is deleted from debian directory .
       new  8f33ccf   Lincense change for lib/naview.c kindly granted by Robert E Bruccoleri.
       new  ab8efe3   added information about RNAforester to long description .
       new  c6fc4b1   quilt refresh -p ab --no-timestamps --no-index
       new  8ae78b0   removed index&timestamps ,added DEP3 header .
       new  cb40cbd   forgot dep3 header for naview.c
       new  18053ed   Added description for RNAforester , addedd --with autools_dev to rules .
       new  3d309e2   added missing manual pages , as source used project's webpage & source .
       new  4310daf   Fine-tuning of debian/control (we -> It, readability).
       new  89d0102   New upstream release , cleanup for the debian dir for the new source .
       new  2f9908f   fixed few linitin's pedantic complains .
       new  351ef15   Fix Vcs fields globally in all remaining packages because I'm bored by warnings in logfiles when investigating machine readable files of not yet uploaded packages
       new  83ca171   vienna-rna was never uplaoded to unstable
       new  1651185   Add a license "name" to be read by machine-readable gatherer
       new  e5b6102   updates for ViennaRNA v2.1.8
       new  3144c26   update status, fix multi-arch
       new  c0ef24f   remove autobuilder generated file
       new  094696a   remove jquery and create symlink
       new  a1f5973   remove pending autobuilder files
       new  4a41159   add override after an effective cleanup in code, remove html from orig because build process regenerate html files
       new  015da58   add missing build deps, pending error with pbuilder to generate pdf
       new  b966dd8   fix watch file, upload to experimental
       new  48fcc2b   Remove Multi-Arch: no
       new  64dfab7   fix error in override and add more description
       new  94ce331   fix section to non-free
       new  620c07b   fix section to non-free and comments
       new  84e1453   typo errors in License
       new  83fbf24   update licenses to non-free
       new  6bc703a   remove RNAforester from upstream source
       new  a52034b   remove RNAforester g2 patch
       new  cbd4db7   update changelog
       new  bc5721f   cleanup fixes for multiple rebuilds
       new  23c7b15   update changes
       new  a5ba64a   Fix watch file
       new  f3ccb39   New upstream version 2.4.3+dfsg
       new  64a1b3b   Update upstream source from tag 'upstream/2.4.3+dfsg'
       new  3b1dc29   Cleanup changelog
       new  248ad8e   debhelper 10
       new  af7203a   cme
       new  9eb92af   Moved packaging from SVN to Git

The 90 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/vienna-rna.git