[med-svn] [libseqlib] 04/04: Do not use code copy of jsoncpp but Debian packaged code

[Andreas Tille]

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tille pushed a commit to branch master
in repository libseqlib.

commit e7eac341980a2a8dea5a8a6f1ac3f53cbd8814fc
Author: Andreas Tille <tille at debian.org>
Date:   Fri Feb 3 17:44:20 2017 +0100

    Do not use code copy of jsoncpp but Debian packaged code
---
 debian/patches/series                            |  1 +
 debian/patches/use_debian_packaged_jsoncpp.patch | 14 ++++++++++++++
 2 files changed, 15 insertions(+)

diff --git a/debian/patches/series b/debian/patches/series
index 607b83e..3fe6273 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -4,3 +4,4 @@ fix_fermi-lite_usage.patch
 fix_htslib_usage.patch
 fml_include_path.patch
 dynamic_lib.patch
+use_debian_packaged_jsoncpp.patch
diff --git a/debian/patches/use_debian_packaged_jsoncpp.patch b/debian/patches/use_debian_packaged_jsoncpp.patch
new file mode 100644
index 0000000..4007395
--- /dev/null
+++ b/debian/patches/use_debian_packaged_jsoncpp.patch
@@ -0,0 +1,14 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Fri, 27 Jan 2017 13:18:48 +0100
+Description: Do not use code copy of jsoncpp
+
+--- a/src/Makefile.am
++++ b/src/Makefile.am
+@@ -1,6 +1,6 @@
+ lib_LTLIBRARIES  = libseqlib.la
+ 
+-libseqlib_la_CPPFLAGS = -I../ -I../htslib -I/usr/include/fml -Wno-sign-compare
++libseqlib_la_CPPFLAGS = -I../ -I../htslib -I/usr/include/fml -I/usr/include/jsoncpp/ -Wno-sign-compare
+ 
+ libseqlib_la_SOURCES =   FastqReader.cpp BFC.cpp ReadFilter.cpp SeqPlot.cpp jsoncpp.cpp ssw_cpp.cpp ssw.c \
+ 			GenomicRegion.cpp RefGenome.cpp BamWriter.cpp BamReader.cpp \

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