[med-svn] [beagle] branch upstream updated (e764473 -> 1f3da14)

[Dylan Aïssi]

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bob.dybian-guest pushed a change to branch upstream
in repository beagle.

      from  e764473   Imported Upstream version 4.1~160727-86a+dfsg
       new  1f3da14   Imported Upstream version 4.1~170121-6cc+dfsg

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 ibd/HaploidIbd.java     | 31 +++++++++++++++++++++++--------
 ibd/IbsHapSegments.java | 11 +++++------
 main/Main.java          |  6 +++---
 main/MainHelper.java    | 20 ++++++++++----------
 main/Par.java           | 13 ++++++++++++-
 main/WindowWriter.java  |  8 ++++----
 vcf/VcfWindow.java      |  3 +--
 7 files changed, 58 insertions(+), 34 deletions(-)

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