[med-svn] [libseqlib] branch master updated (68643fc -> 0f62dce)

[Andreas Tille]

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tille pushed a change to branch master
in repository libseqlib.

      from  68643fc   Add libjsoncpp-dev to depends since json/json.h will be included by the header files
       new  2692c69   Also libbwa-dev is needed as dependency, also GenomicRegionCollection.cpp is really needed by freebayes
       new  37c0aee   Use versioned dependency from libhts-dev which now contains cram/cram.h; use pkg-config
       new  25a190f   Add pkg-config file
       new  0f62dce   Use pkg-config

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Summary of changes:
 debian/control                                   |  8 +++--
 debian/patches/dynamic_lib.patch                 |  2 +-
 debian/patches/pkg-config.patch                  | 40 ++++++++++++++++++++++++
 debian/patches/series                            |  1 +
 debian/patches/use_debian_packaged_jsoncpp.patch |  4 +--
 debian/patches/use_debian_packaged_ssw.patch     |  2 +-
 debian/rules                                     |  5 +--
 7 files changed, 53 insertions(+), 9 deletions(-)
 create mode 100644 debian/patches/pkg-config.patch

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