[med-svn] [iqtree] 02/03: Implement remarks given by upstream

[Andreas Tille]

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tille pushed a commit to branch master
in repository iqtree.

commit 7b695c75b327f5321797b46dc6c6e16868c12ec0
Author: Andreas Tille <tille at debian.org>
Date:   Sat Feb 11 12:52:39 2017 +0100

    Implement remarks given by upstream
---
 debian/Documents_source/example.sh | 20 ++++++++++++--------
 debian/changelog                   |  6 +++++-
 2 files changed, 17 insertions(+), 9 deletions(-)

diff --git a/debian/Documents_source/example.sh b/debian/Documents_source/example.sh
index aa81fc7..c8f6fd1 100644
--- a/debian/Documents_source/example.sh
+++ b/debian/Documents_source/example.sh
@@ -29,7 +29,6 @@ time $PATHTOEXE -s example.phy -nni1
 time $PATHTOEXE -s example.phy -m TEST
 time $PATHTOEXE -s example.phy -m TIM+I+G
 time $PATHTOEXE -s example.phy -m TESTONLY
-time $PATHTOEXE -s example.phy -pll -m GTR+G
 time $PATHTOEXE -s example.phy -m TIM+I+G -bb 1000
 time $PATHTOEXE -s example.phy -m TIM+I+G -b 100
 time $PATHTOEXE -s example.phy -m TIM+I+G -alrt 1000
@@ -37,14 +36,19 @@ time $PATHTOEXE -s example.phy -m TIM+I+G -lbp 1000
 time $PATHTOEXE -s example.phy -m TIM+I+G -alrt 1000 -lbp 1000
 time $PATHTOEXE -s example.phy -m TIM+I+G -bb 1000 -alrt 1000 -lbp 1000
 time $PATHTOEXE -s example.phy -sp example.nex
-time $PATHTOEXE-omp -s example.phy
 time $PATHTOEXE-omp -s example.phy -omp 2
-time $PATHTOEXE-omp -s example.phy -omp 3
-time $PATHTOEXE -s example.phy -z example.treels
-time $PATHTOEXE -s example.phy -z example.treels -n 1
-time $PATHTOEXE -s example.phy -z example.treels -n 1 -zb 1000
-time $PATHTOEXE -s example.phy -z example.treels -n 1 -zb 1000 -zw
+if [ $(nproc) -ge 3 ] ; then
+  time $PATHTOEXE-omp -s example.phy -omp 3
+fi
+if [ -e example.treels ] ; then
+  time $PATHTOEXE -s example.phy -z example.treels
+  time $PATHTOEXE -s example.phy -z example.treels -n 1
+  time $PATHTOEXE -s example.phy -z example.treels -n 1 -zb 1000
+  time $PATHTOEXE -s example.phy -z example.treels -n 1 -zb 1000 -zw
+fi
 time $PATHTOEXE -s example.phy -m 010010+G
-time $PATHTOEXE -s example.phy -m mymodel+G
+if [ -e mymodel ] ; then
+  time $PATHTOEXE -s example.phy -m mymodel+G
+fi
 time $PATHTOEXE -s example.phy -m 'TN{2.0,3.0}+G8{0.5}+I{0.15}'
 time $PATHTOEXE -s example.phy -m GTR+G+Fo
diff --git a/debian/changelog b/debian/changelog
index d3c3d63..6f9eae5 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -4,7 +4,11 @@ iqtree (1.5.3+dfsg-2) UNRELEASED; urgency=medium
   * debian/rules:
     - Run dh_auto_test only if CPUs >= 2 (Closes: #854500).
 
- -- Roger Shimizu <rogershimizu at gmail.com>  Sat, 11 Feb 2017 17:21:32 +0900
+  [ Andreas Tille ]
+  * Implement remarks given by upstream
+    (https://github.com/Cibiv/IQ-TREE/issues/17)
+
+ -- Andreas Tille <tille at debian.org>  Sat, 11 Feb 2017 12:50:53 +0100
 
 iqtree (1.5.3+dfsg-1) unstable; urgency=medium
 

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