[med-svn] [r-cran-ape] 02/02: Merge tag 'upstream/4.1'

[Dylan Aïssi]

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bob.dybian-guest pushed a commit to branch master
in repository r-cran-ape.

commit b91b106fda83e26deb392335fef89340ca7f614d
Merge: badaf97 4ef917e
Author: Dylan Aïssi <bob.dybian at gmail.com>
Date:   Wed Feb 22 22:41:30 2017 +0100

    Merge tag 'upstream/4.1'
    
    Upstream version 4.1

 DESCRIPTION          |  12 +--
 MD5                  |  40 ++++-----
 NAMESPACE            |   2 +-
 R/DNA.R              |  47 ++++++-----
 R/apetools.R         |  83 ++++++++++++++++++
 R/chronos.R          |   7 +-
 R/drop.tip.R         |  83 ++++++------------
 R/multi2di.R         |   6 +-
 R/nj.R               |   6 +-
 R/node.dating.R      | 232 ++++++++++++++++++++++++++++++---------------------
 R/read.GenBank.R     |  11 ++-
 R/read.dna.R         |  49 +++++++++--
 R/read.nexus.R       |   8 +-
 inst/doc/MoranI.pdf  | Bin 238589 -> 238354 bytes
 man/apetools.Rd      |  47 +++++++++++
 man/as.bitsplits.Rd  |   2 +-
 man/c.phylo.Rd       |   2 +-
 man/is.compatible.Rd |   1 +
 man/node.dating.Rd   |  15 ++--
 man/read.dna.Rd      | 111 ++++++++++++++++++------
 man/read.nexus.Rd    |  10 ++-
 src/read_dna.c       |  11 ++-
 22 files changed, 524 insertions(+), 261 deletions(-)

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