[med-svn] r23450 - in trunk/packages/emmax/trunk/debian: . upstream
Andreas Tille
tille at moszumanska.debian.org
Mon Jan 2 19:29:14 UTC 2017
Author: tille
Date: 2017-01-02 19:29:13 +0000 (Mon, 02 Jan 2017)
New Revision: 23450
Added:
trunk/packages/emmax/trunk/debian/upstream/
trunk/packages/emmax/trunk/debian/upstream/metadata
Modified:
trunk/packages/emmax/trunk/debian/changelog
trunk/packages/emmax/trunk/debian/compat
trunk/packages/emmax/trunk/debian/control
trunk/packages/emmax/trunk/debian/copyright
trunk/packages/emmax/trunk/debian/rules
Log:
Normalise packaging, point in d/copyright to alternative download location, citation
Modified: trunk/packages/emmax/trunk/debian/changelog
===================================================================
--- trunk/packages/emmax/trunk/debian/changelog 2017-01-02 15:29:50 UTC (rev 23449)
+++ trunk/packages/emmax/trunk/debian/changelog 2017-01-02 19:29:13 UTC (rev 23450)
@@ -1,12 +1,5 @@
-emmax (0~beta.20100307-2) UNRELEASED; urgency=low
-
- * Added example script to transform .ped files for emmax
-
- -- Steffen Moeller <moeller at debian.org> Thu, 13 Jun 2013 10:47:43 +0200
-
emmax (0~beta.20100307-1) UNRELEASED; urgency=low
* Initial release pending, not uploaded because of unknown license.
- * Created rough help2man-seeded man pages
- -- Steffen Moeller <moeller at debian.org> Mon, 10 Jun 2013 13:26:24 +0200
+ -- Steffen Moeller <moeller at debian.org> Thu, 13 Jun 2013 10:47:43 +0200
Modified: trunk/packages/emmax/trunk/debian/compat
===================================================================
--- trunk/packages/emmax/trunk/debian/compat 2017-01-02 15:29:50 UTC (rev 23449)
+++ trunk/packages/emmax/trunk/debian/compat 2017-01-02 19:29:13 UTC (rev 23450)
@@ -1 +1 @@
-8
+10
Modified: trunk/packages/emmax/trunk/debian/control
===================================================================
--- trunk/packages/emmax/trunk/debian/control 2017-01-02 15:29:50 UTC (rev 23449)
+++ trunk/packages/emmax/trunk/debian/control 2017-01-02 19:29:13 UTC (rev 23450)
@@ -1,17 +1,25 @@
Source: emmax
-Section: science
-Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Uploaders: SteffenSteffen Moeller <moeller at debian.org>
-Build-Depends: debhelper (>= 8.0.0), libatlas-dev, liblapack-dev, zlib1g-dev, libblas3, liblapack3, libatlas3-base, libatlas-base-dev
-Standards-Version: 3.9.4
+Section: science
+Priority: optional
+Build-Depends: debhelper (>= 10),
+ libatlas-dev,
+ liblapack-dev,
+ zlib1g-dev,
+ libblas3,
+ liblapack3,
+ libatlas3-base,
+ libatlas-base-dev
+Standards-Version: 3.9.8
+Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/emmax/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/emmax/trunk/
Homepage: http://genome.sph.umich.edu/wiki/EMMAX
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/emmax/trunk/
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/emmax/trunk/
Package: emmax
Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}
+Depends: ${shlibs:Depends},
+ ${misc:Depends}
Description: genetic mapping considering population structure
EMMAX is a statistical test for large scale human or model organism
association mapping accounting for the sample structure. In addition
@@ -20,15 +28,3 @@
complex traits, which allows to avoid repetitive variance component
estimation procedure, resulting in a significant amount of increase in
computational time of association mapping using mixed model.
-
-Package: emmax-dbg
-Architecture: any
-Section: debug
-Priority: extra
-Depends: emmax (= ${binary:Version}), ${misc:Depends}
-Description: debug information for emmax
- This package contains the dubgging symbols for emmax.
- In case of a reproducible crash, you may be asked by
- the developers to install this package and provide
- a better annotated backtrace.
-
Modified: trunk/packages/emmax/trunk/debian/copyright
===================================================================
--- trunk/packages/emmax/trunk/debian/copyright 2017-01-02 15:29:50 UTC (rev 23449)
+++ trunk/packages/emmax/trunk/debian/copyright 2017-01-02 19:29:13 UTC (rev 23450)
@@ -1,6 +1,6 @@
Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: emmax
-Source: http://www.sph.umich.edu/csg/kang/emmax/download/index.html
+Source: http://genetics.cs.ucla.edu/emmax/
Files: *
Copyright: <years> <put author's name and email here>
Modified: trunk/packages/emmax/trunk/debian/rules
===================================================================
--- trunk/packages/emmax/trunk/debian/rules 2017-01-02 15:29:50 UTC (rev 23449)
+++ trunk/packages/emmax/trunk/debian/rules 2017-01-02 19:29:13 UTC (rev 23450)
@@ -1,19 +1,9 @@
#!/usr/bin/make -f
-# -*- makefile -*-
-# Sample debian/rules that uses debhelper.
-# This file was originally written by Joey Hess and Craig Small.
-# As a special exception, when this file is copied by dh-make into a
-# dh-make output file, you may use that output file without restriction.
-# This special exception was added by Craig Small in version 0.37 of dh-make.
-
# Uncomment this to turn on verbose mode.
#export DH_VERBOSE=1
%:
- dh $@ --parallel
+ dh $@
-override_dh_strip:
- dh_strip --dbg-package=emmax-dbg
-
override_dh_install:
dh_install --sourcedir=.
Added: trunk/packages/emmax/trunk/debian/upstream/metadata
===================================================================
--- trunk/packages/emmax/trunk/debian/upstream/metadata (rev 0)
+++ trunk/packages/emmax/trunk/debian/upstream/metadata 2017-01-02 19:29:13 UTC (rev 23450)
@@ -0,0 +1,11 @@
+Reference:
+ Author: Hyun Min Kang and Jae Hoon Sul and Susan K Service and Noah A Zaitlen and Sit-yee Kong and Nelson B Freimer and Chiara Sabatti and Eleazar Eskin
+ Title: "Variance component model to account for sample structure in genome-wide association studies"
+ Journal: Nature Genetics
+ Year: 2010
+ Volume: 42
+ Number: 4
+ Pages: 348-54
+ DOI: 10.1038/ng.548
+ PMID: 20208533
+ URL: http://www.nature.com/ng/journal/v42/n4/full/ng.548.html
More information about the debian-med-commit
mailing list