[med-svn] r23465 - trunk/packages/strap/trunk/debian

Andreas Tille tille at moszumanska.debian.org
Tue Jan 3 07:27:01 UTC 2017


Author: tille
Date: 2017-01-03 07:27:00 +0000 (Tue, 03 Jan 2017)
New Revision: 23465

Modified:
   trunk/packages/strap/trunk/debian/compat
   trunk/packages/strap/trunk/debian/control
   trunk/packages/strap/trunk/debian/copyright
   trunk/packages/strap/trunk/debian/watch
Log:
Normalised packaging


Modified: trunk/packages/strap/trunk/debian/compat
===================================================================
--- trunk/packages/strap/trunk/debian/compat	2017-01-03 07:23:28 UTC (rev 23464)
+++ trunk/packages/strap/trunk/debian/compat	2017-01-03 07:27:00 UTC (rev 23465)
@@ -1 +1 @@
-9
+10

Modified: trunk/packages/strap/trunk/debian/control
===================================================================
--- trunk/packages/strap/trunk/debian/control	2017-01-03 07:23:28 UTC (rev 23464)
+++ trunk/packages/strap/trunk/debian/control	2017-01-03 07:27:00 UTC (rev 23465)
@@ -1,20 +1,49 @@
 Source: strap
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Christoph Gille <christophgil at googlemail.com>
 Section: science
 Priority: optional
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Christoph Gille <christophgil at googlemail.com>
-Build-Depends: debhelper (>= 9), libx11-dev
-Standards-Version: 3.9.4
+Build-Depends: debhelper (>= 10),
+               libx11-dev
+Standards-Version: 3.9.8
+Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/strap/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/strap/trunk/
 Homepage: http://3d-alignment.eu/
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/strap/trunk/
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/strap/trunk/
 
 Package: strap
 Architecture: any
-Depends: strap-base, gwrite, catdoc, clustalw, kalign, tm-align, pymol, mustang, espeak | recite, , ${shlibs:Depends}, ${misc:Depends}
-Recommends: muscle, mafft, t-coffee, probcons, dialign, dialign-t, amap-align, chemical-mime-data
-Suggests: texlive-latex-base, texlive-latex-extra
-Enhances: clustalw, tm-align, pymol, mustang, muscle, mafft, t-coffee, probcons, dialign, dialign-t, amap-align
+Depends: strap-base,
+         gwrite,
+         catdoc,
+         clustalw,
+         kalign,
+         tm-align,
+         pymol,
+         mustang,
+         espeak | recite,
+         ${shlibs:Depends},
+         ${misc:Depends}
+Recommends: muscle,
+            mafft,
+            t-coffee,
+            probcons,
+            dialign,
+            dialign-t,
+            amap-align,
+            chemical-mime-data
+Suggests: texlive-latex-base,
+          texlive-latex-extra
+Enhances: clustalw,
+          tm-align,
+          pymol,
+          mustang,
+          muscle,
+          mafft,
+          t-coffee,
+          probcons,
+          dialign,
+          dialign-t,
+          amap-align
 Description: Comfortable and intuitive protein alignment editor / viewer
  Strap is started from the menu "Science" in the "Applications" menu
  or with the shell command strap_protein_alignment.  Alignments can be
@@ -30,4 +59,4 @@
  environment for Bioinformatics tools and resources like DAS sequence
  features, 3D-visualization, structure prediction and Blast search. It
  is scriptable and extendable and can be used by other programs to
- display sequence alignments and 3D-superpositions.
\ No newline at end of file
+ display sequence alignments and 3D-superpositions.

Modified: trunk/packages/strap/trunk/debian/copyright
===================================================================
--- trunk/packages/strap/trunk/debian/copyright	2017-01-03 07:23:28 UTC (rev 23464)
+++ trunk/packages/strap/trunk/debian/copyright	2017-01-03 07:27:00 UTC (rev 23465)
@@ -1,4 +1,4 @@
-Format: http://dep.debian.net/deps/dep5/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: Strap
 Upstream-Contact: Christoph Gille christoph_gi-at-googlemail-com
 Source: http://www.bioinformatics.org/strap/debian/
@@ -9,25 +9,25 @@
   Strap is free software; you can redistribute it and/or modify it under the terms of
   the GNU General Public License as published by the Free Software Foundation; either
   version 2 of the License, or (at your option) any later version.
-  .
+ .
   Strap is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY;
   without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
   PURPOSE. See the GNU General Public License for more details.
-  .
+ .
   You should have received a copy of the GNU General Public License along with Strap;
   if not, write to the Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
   Boston, MA 02110-1301 USA.
-  .
+ .
   Proper attribution of the author as the source of the software would be appreciated.
   Comment: On Debian systems, the complete text of the GNU General Public License
   version 2 can be found in ‘/usr/share/common-licenses/GPL-2’
 
-Files: texhade.sty  
+Files: texhade.sty
 Copyright: 1999-2009 Eric Beitz
 License: GPL-2
   see "/usr/share/common-licenses/GPL-2".
 
-Files: vmargin.sty 
+Files: vmargin.sty
 Copyright: 1993-1996,1999,2000,2004 Volker Kuhlmann
 License: LPPL-1
 Comment:
@@ -36,29 +36,27 @@
   macros/latex/base/lppl.txt; either version 1 of the License, or (at
   your option) any later version.
 
-
-
 License: LPPL-1
   PREAMBLE
   ========
-  .
+ .
   The LaTeX Project Public License (LPPL) is the primary license under
   which the LaTeX kernel and the base LaTeX packages are distributed.
-  .
+ .
   You may use this license for any work of which you hold the copyright
   and which you wish to distribute.  This license may be particularly
   suitable if your work is TeX-related (such as a LaTeX package), but 
   it is written in such a way that you can use it even if your work is 
   unrelated to TeX.
-  .
+ .
   The section `WHETHER AND HOW TO DISTRIBUTE WORKS UNDER THIS LICENSE',
   below, gives instructions, examples, and recommendations for authors
   who are considering distributing their works under this license.
-  .
+ .
   This license gives conditions under which a work may be distributed
   and modified, as well as conditions under which modified versions of
   that work may be distributed.
-  .
+ .
   We, the LaTeX3 Project, believe that the conditions below give you
   the freedom to make and distribute modified versions of your work
   that conform with whatever technical specifications you wish while
@@ -66,36 +64,36 @@
   that work.  If you do not see how to achieve your goal while
   meeting these conditions, then read the document `cfgguide.tex'
   and `modguide.tex' in the base LaTeX distribution for suggestions.
-  .
+ .
   DEFINITIONS
   ===========
-  .
+ .
   In this license document the following terms are used:
-  .
+ .
      `Work'
       Any work being distributed under this License.
-  .
+ .
      `Derived Work'
       Any work that under any applicable law is derived from the Work.
-  .
+ .
      `Modification' 
       Any procedure that produces a Derived Work under any applicable
       law -- for example, the production of a file containing an
       original file associated with the Work or a significant portion of
       such a file, either verbatim or with modifications and/or
       translated into another language.
-  .
+ .
      `Modify'
       To apply any procedure that produces a Derived Work under any
       applicable law.
-  .
+ .
      `Distribution'
       Making copies of the Work available from one person to another, in
       whole or in part.  Distribution includes (but is not limited to)
       making any electronic components of the Work accessible by
       file transfer protocols such as FTP or HTTP or by shared file
       systems such as Sun's Network File System (NFS).
-  .
+ .
      `Compiled Work'
       A version of the Work that has been processed into a form where it
       is directly usable on a computer system.  This processing may
@@ -103,16 +101,16 @@
       transformations of the Work, copying of components of the Work, or
       other activities.  Note that modification of any installation
       facilities provided by the Work constitutes modification of the Work.
-  .
+ .
      `Current Maintainer'
       A person or persons nominated as such within the Work.  If there is
       no such explicit nomination then it is the `Copyright Holder' under
       any applicable law.
-  .
+ .
      `Base Interpreter' 
       A program or process that is normally needed for running or
       interpreting a part or the whole of the Work.    
-  .
+ .
       A Base Interpreter may depend on external components but these
       are not considered part of the Base Interpreter provided that each
       external component clearly identifies itself whenever it is used
@@ -120,46 +118,46 @@
       license to the Work, the only applicable Base Interpreter is a
       `LaTeX-Format' or in the case of files belonging to the 
       `LaTeX-format' a program implementing the `TeX language'.
-  .
+ .
   CONDITIONS ON DISTRIBUTION AND MODIFICATION
   ===========================================
-  .
+ .
   1.  Activities other than distribution and/or modification of the Work
   are not covered by this license; they are outside its scope.  In
   particular, the act of running the Work is not restricted and no
   requirements are made concerning any offers of support for the Work.
-  .
+ .
   2.  You may distribute a complete, unmodified copy of the Work as you
   received it.  Distribution of only part of the Work is considered
   modification of the Work, and no right to distribute such a Derived
   Work may be assumed under the terms of this clause.
-  .
+ .
   3.  You may distribute a Compiled Work that has been generated from a
   complete, unmodified copy of the Work as distributed under Clause 2
   above, as long as that Compiled Work is distributed in such a way that
   the recipients may install the Compiled Work on their system exactly
   as it would have been installed if they generated a Compiled Work
   directly from the Work.
-  .
+ .
   4.  If you are the Current Maintainer of the Work, you may, without
   restriction, modify the Work, thus creating a Derived Work.  You may
   also distribute the Derived Work without restriction, including
   Compiled Works generated from the Derived Work.  Derived Works
   distributed in this manner by the Current Maintainer are considered to
   be updated versions of the Work.
-  .
+ .
   5.  If you are not the Current Maintainer of the Work, you may modify
   your copy of the Work, thus creating a Derived Work based on the Work,
   and compile this Derived Work, thus creating a Compiled Work based on
   the Derived Work.
-  .
+ .
   6.  If you are not the Current Maintainer of the Work, you may
   distribute a Derived Work provided the following conditions are met
   for every component of the Work unless that component clearly states
   in the copyright notice that it is exempt from that condition.  Only
   the Current Maintainer is allowed to add such statements of exemption 
   to a component of the Work. 
-  .
+ .
     a. If a component of this Derived Work can be a direct replacement
        for a component of the Work when that component is used with the
        Base Interpreter, then, wherever this component of the Work
@@ -168,22 +166,22 @@
        clearly and unambiguously identifies itself as a modified version
        of this component to the user when used interactively with that
        Base Interpreter.
-  .
+ .
     b. Every component of the Derived Work contains prominent notices
        detailing the nature of the changes to that component, or a
        prominent reference to another file that is distributed as part
        of the Derived Work and that contains a complete and accurate log
        of the changes.
-  .
+ .
     c. No information in the Derived Work implies that any persons,
        including (but not limited to) the authors of the original version
        of the Work, provide any support, including (but not limited to)
        the reporting and handling of errors, to recipients of the
        Derived Work unless those persons have stated explicitly that
        they do provide such support for the Derived Work.
-  .
+ .
     d. You distribute at least one of the following with the Derived Work:
-  .
+ .
          1. A complete, unmodified copy of the Work; 
             if your distribution of a modified component is made by
             offering access to copy the modified component from a
@@ -191,47 +189,47 @@
             the Work from the same or some similar place meets this
             condition, even though third parties are not compelled to
             copy the Work along with the modified component;
-  .
+ .
          2. Information that is sufficient to obtain a complete,
             unmodified copy of the Work.
-  .
+ .
   7.  If you are not the Current Maintainer of the Work, you may
   distribute a Compiled Work generated from a Derived Work, as long as
   the Derived Work is distributed to all recipients of the Compiled
   Work, and as long as the conditions of Clause 6, above, are met with
   regard to the Derived Work.
-  .
+ .
   8.  The conditions above are not intended to prohibit, and hence do not
   apply to, the modification, by any method, of any component so that it
   becomes identical to an updated version of that component of the Work as
   it is distributed by the Current Maintainer under Clause 4, above.
-  .
+ .
   9.  Distribution of the Work or any Derived Work in an alternative
   format, where the Work or that Derived Work (in whole or in part) is
   then produced by applying some process to that format, does not relax or
   nullify any sections of this license as they pertain to the results of
   applying that process.
-  .
+ .
   10. a. A Derived Work may be distributed under a different license
          provided that license itself honors the conditions listed in
          Clause 6 above, in regard to the Work, though it does not have
          to honor the rest of the conditions in this license.
-  .
+ .
       b. If a Derived Work is distributed under a different license, that
          Derived Work must provide sufficient documentation as part of
          itself to allow each recipient of that Derived Work to honor the 
          restrictions in Clause 6 above, concerning changes from the Work.
-  .
+ .
   11. This license places no restrictions on works that are unrelated to
   the Work, nor does this license place any restrictions on aggregating
   such works with the Work by any means.
-  .
+ .
   12.  Nothing in this license is intended to, or may be used to, prevent
   complete compliance by all parties with all applicable laws.
-  .
+ .
   NO WARRANTY
   ===========
-  .
+ .
   There is no warranty for the Work.  Except when otherwise stated in
   writing, the Copyright Holder provides the Work `as is', without
   warranty of any kind, either expressed or implied, including, but not
@@ -239,7 +237,7 @@
   particular purpose.  The entire risk as to the quality and performance
   of the Work is with you.  Should the Work prove defective, you assume
   the cost of all necessary servicing, repair, or correction.
-  .
+ .
   In no event unless required by applicable law or agreed to in writing
   will The Copyright Holder, or any author named in the components of the
   Work, or any other party who may distribute and/or modify the Work as
@@ -250,89 +248,89 @@
   anyone as a result of any failure of the Work to operate with any other
   programs), even if the Copyright Holder or said author or said other
   party has been advised of the possibility of such damages.
-  .
+ .
   MAINTENANCE OF THE WORK
   =======================
-  .
+ .
   The Work has the status `author-maintained' if the Copyright Holder
   explicitly and prominently states near the primary copyright notice in
   the Work that the Work can only be maintained by the Copyright Holder
   or simply that it is `author-maintained'.
-  .
+ .
   The Work has the status `maintained' if there is a Current Maintainer
   who has indicated in the Work that they are willing to receive error
   reports for the Work (for example, by supplying a valid e-mail
   address). It is not required for the Current Maintainer to acknowledge
   or act upon these error reports.
-  .
+ .
   The Work changes from status `maintained' to `unmaintained' if there
   is no Current Maintainer, or the person stated to be Current
   Maintainer of the work cannot be reached through the indicated means
   of communication for a period of six months, and there are no other
   significant signs of active maintenance.
-  .
+ .
   You can become the Current Maintainer of the Work by agreement with
   any existing Current Maintainer to take over this role.
-  .
+ .
   If the Work is unmaintained, you can become the Current Maintainer of
   the Work through the following steps:
-  .
+ .
    1.  Make a reasonable attempt to trace the Current Maintainer (and
        the Copyright Holder, if the two differ) through the means of
        an Internet or similar search.
-  .
+ .
    2.  If this search is successful, then enquire whether the Work
        is still maintained.
-  .
+ .
     a. If it is being maintained, then ask the Current Maintainer
        to update their communication data within one month.
-  .
+ .
     b. If the search is unsuccessful or no action to resume active
        maintenance is taken by the Current Maintainer, then announce
        within the pertinent community your intention to take over
        maintenance.  (If the Work is a LaTeX work, this could be
        done, for example, by posting to comp.text.tex.)
-  .
+ .
    3a. If the Current Maintainer is reachable and agrees to pass
        maintenance of the Work to you, then this takes effect
        immediately upon announcement.
-  .
+ .
     b. If the Current Maintainer is not reachable and the Copyright
        Holder agrees that maintenance of the Work be passed to you,
        then this takes effect immediately upon announcement.  
-  .
+ .
    4.  If you make an `intention announcement' as described in 2b. above
        and after three months your intention is challenged neither by
        the Current Maintainer nor by the Copyright Holder nor by other
        people, then you may arrange for the Work to be changed so as
        to name you as the (new) Current Maintainer.
-  .
+ .
    5.  If the previously unreachable Current Maintainer becomes
        reachable once more within three months of a change completed
        under the terms of 3b) or 4), then that Current Maintainer must
        become or remain the Current Maintainer upon request provided
        they then update their communication data within one month.
-  .
+ .
   A change in the Current Maintainer does not, of itself, alter the fact
   that the Work is distributed under the LPPL license.
-  .
+ .
   If you become the Current Maintainer of the Work, you should
   immediately provide, within the Work, a prominent and unambiguous
   statement of your status as Current Maintainer.  You should also
   announce your new status to the same pertinent community as
   in 2b) above.
-  .
+ .
   WHETHER AND HOW TO DISTRIBUTE WORKS UNDER THIS LICENSE
   ======================================================
-  .
+ .
   This section contains important instructions, examples, and
   recommendations for authors who are considering distributing their
   works under this license.  These authors are addressed as `you' in
   this section.
-  .
+ .
   Choosing This License or Another License
   ----------------------------------------
-  .
+ .
   If for any part of your work you want or need to use *distribution*
   conditions that differ significantly from those in this license, then
   do not refer to this license anywhere in your work but, instead,
@@ -340,7 +338,7 @@
   of this license as a model for your own license, but your license
   should not refer to the LPPL or otherwise give the impression that
   your work is distributed under the LPPL.
-  .
+ .
   The document `modguide.tex' in the base LaTeX distribution explains
   the motivation behind the conditions of this license.  It explains,
   for example, why distributing LaTeX under the GNU General Public
@@ -348,10 +346,10 @@
   unrelated to LaTeX, the discussion in `modguide.tex' may still be
   relevant, and authors intending to distribute their works under any
   license are encouraged to read it.
-  .
+ .
   A Recommendation on Modification Without Distribution
   -----------------------------------------------------
-  .
+ .
   It is wise never to modify a component of the Work, even for your own
   personal use, without also meeting the above conditions for
   distributing the modified component.  While you might intend that such
@@ -364,18 +362,18 @@
   best interest to keep your copy of the Work identical with the public
   one.  Many works provide ways to control the behavior of that work
   without altering any of its licensed components.
-  .
+ .
   How to Use This License
   -----------------------
-  .
+ .
   To use this license, place in each of the components of your work both
   an explicit copyright notice including your name and the year the work
   was authored and/or last substantially modified.  Include also a
   statement that the distribution and/or modification of that
   component is constrained by the conditions in this license.
-  .
+ .
   Here is an example of such a notice and statement:
-  .
+ .
     %% pig.dtx
     %% Copyright 2005 M. Y. Name
     %
@@ -393,48 +391,47 @@
     %
     % This work consists of the files pig.dtx and pig.ins
     % and the derived file pig.sty.
-  .
+ .
   Given such a notice and statement in a file, the conditions
   given in this license document would apply, with the `Work' referring
   to the three files `pig.dtx', `pig.ins', and `pig.sty' (the last being
   generated from `pig.dtx' using `pig.ins'), the `Base Interpreter'
   referring to any `LaTeX-Format', and both `Copyright Holder' and
   `Current Maintainer' referring to the person `M. Y. Name'.
-  .
+ .
   If you do not want the Maintenance section of LPPL to apply to your
   Work, change `maintained' above into `author-maintained'.  
   However, we recommend that you use `maintained', as the Maintenance
   section was added in order to ensure that your Work remains useful to
   the community even when you can no longer maintain and support it
   yourself.
-  .
+ .
   Derived Works That Are Not Replacements
   ---------------------------------------
-  .
+ .
   Several clauses of the LPPL specify means to provide reliability and
   stability for the user community. They therefore concern themselves
   with the case that a Derived Work is intended to be used as a
   (compatible or incompatible) replacement of the original Work. If
   this is not the case (e.g., if a few lines of code are reused for a
   completely different task), then clauses 6b and 6d shall not apply.
-  .
+ .
   Important Recommendations
   -------------------------
-  .
+ .
    Defining What Constitutes the Work
-  .
+ .
      The LPPL requires that distributions of the Work contain all the
      files of the Work.  It is therefore important that you provide a
      way for the licensee to determine which files constitute the Work.
      This could, for example, be achieved by explicitly listing all the
      files of the Work near the copyright notice of each file or by
      using a line such as:
-  .
+ .
       % This work consists of all files listed in manifest.txt.
-  .
+ .
      in that place.  In the absence of an unequivocal list it might be
      impossible for the licensee to determine what is considered by you
      to comprise the Work and, in such a case, the licensee would be
      entitled to make reasonable conjectures as to which files comprise
      the Work.
- 
\ No newline at end of file

Modified: trunk/packages/strap/trunk/debian/watch
===================================================================
--- trunk/packages/strap/trunk/debian/watch	2017-01-03 07:23:28 UTC (rev 23464)
+++ trunk/packages/strap/trunk/debian/watch	2017-01-03 07:27:00 UTC (rev 23465)
@@ -1,5 +1,4 @@
-# watch control file for uscan
-version=3
+version=4
 http://www.bioinformatics.org/strap/debian/strap_([0-9.]+).orig\.tar\.gz  debian uupdate
 
  




More information about the debian-med-commit mailing list