[med-svn] r23474 - in trunk/packages/bagpipe/trunk/debian: . upstream

[Andreas Tille]

Author: tille
Date: 2017-01-03 08:17:53 +0000 (Tue, 03 Jan 2017)
New Revision: 23474

Added:
   trunk/packages/bagpipe/trunk/debian/upstream/
   trunk/packages/bagpipe/trunk/debian/upstream/metadata
Modified:
   trunk/packages/bagpipe/trunk/debian/compat
   trunk/packages/bagpipe/trunk/debian/control
   trunk/packages/bagpipe/trunk/debian/copyright
Log:
Normalised packaging and moved citation from long description to upstream/metadata


Modified: trunk/packages/bagpipe/trunk/debian/compat
===================================================================
--- trunk/packages/bagpipe/trunk/debian/compat	2017-01-03 08:07:43 UTC (rev 23473)
+++ trunk/packages/bagpipe/trunk/debian/compat	2017-01-03 08:17:53 UTC (rev 23474)
@@ -1 +1 @@
-9
+10

Modified: trunk/packages/bagpipe/trunk/debian/control
===================================================================
--- trunk/packages/bagpipe/trunk/debian/control	2017-01-03 08:07:43 UTC (rev 23473)
+++ trunk/packages/bagpipe/trunk/debian/control	2017-01-03 08:17:53 UTC (rev 23474)
@@ -1,17 +1,20 @@
 Source: bagpipe
-Section: science
-Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Thorsten Alteholz <debian at alteholz.de>
-Build-Depends: debhelper (>= 9)
-Standards-Version: 3.9.4
+Section: science
+Priority: optional
+Build-Depends: debhelper (>= 10)
+Standards-Version: 3.9.8
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/bagpipe/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/bagpipe/trunk/
 Homepage: http://valdarlab.unc.edu/software/bagpipe/_build/html/bagpipe.html
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/bagpipe/trunk/
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/bagpipe/trunk/
 
 Package: bagpipe
 Architecture: all
-Depends: ${shlibs:Depends}, ${misc:Depends}, ${perl:Depends}, r-other-valdar-bagpipe.backend
+Depends: ${shlibs:Depends},
+         ${misc:Depends},
+         ${perl:Depends},
+         r-other-valdar-bagpipe.backend
 Description: genomewide LD mapping
  Bagpipe is a program for performing genomewide linkage disequilibrium 
  mapping of quantitative trait loci in populations whose genome structure 
@@ -34,12 +37,3 @@
     heterogeneous stock mice in [Valdar06].
   * Bagpipe is experimental software, is provided free of charge subject to 
     copyleft restrictions, and comes with no guarantees whatsoever.
- .
- [Mott00] Mott R, Talbot CJ, Turri MG, Collins AC, Flint, J (2000) 
- A method for fine mapping quantitative trait loci in outbred animal 
- stocks. Proceedings of the National Academy of Sciences of the United 
- States of America, 97(23), 12649-54.
- [Valdar06] Valdar W, Solberg LC, Gaugier D, Burnett S, Klenerman P, 
- Cookson WO, Taylor M, Rawlins JNP, Mott R, Flint J (2006) 
- Genome-wide genetic association of complex traits in outbred mice. 
- Nature Genetics 38(8):879-87. PMID:16832355

Modified: trunk/packages/bagpipe/trunk/debian/copyright
===================================================================
--- trunk/packages/bagpipe/trunk/debian/copyright	2017-01-03 08:07:43 UTC (rev 23473)
+++ trunk/packages/bagpipe/trunk/debian/copyright	2017-01-03 08:17:53 UTC (rev 23474)
@@ -1,4 +1,4 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: bagpipe
 Source:  http://valdarlab.unc.edu/software/bagpipe/_build/html/bagpipe.html
 

Added: trunk/packages/bagpipe/trunk/debian/upstream/metadata
===================================================================
--- trunk/packages/bagpipe/trunk/debian/upstream/metadata	                        (rev 0)
+++ trunk/packages/bagpipe/trunk/debian/upstream/metadata	2017-01-03 08:17:53 UTC (rev 23474)
@@ -0,0 +1,22 @@
+Reference:
+ - Author: Richard Mott and Christopher J. Talbot and Maria G. Turri and Allan C. Collins and Jonathan Flint
+   Title: "A method for fine mapping quantitative trait loci in outbred animal stocks"
+   Journal: Proc Natl Acad Sci U S A.
+   Year:  2000
+   Volume: 97
+   Number: 23
+   Pages: 12649-54
+   DOI: 10.1073/pnas.230304397 
+   PMID: 11050180
+   URL: http://www.pnas.org/content/97/23/12649
+ - Author: William Valdar and Leah C Solberg and Dominique Gauguier and Stephanie Burnett and Paul Klenerman and William O Cookson and Martin S Taylor and J Nicholas P Rawlins and Richard Mott and Jonathan Flint
+   Title: "Genome-wide genetic association of complex traits in heterogeneous stock mice"
+   Journal: Nature Genetic
+   Year: 2006
+   Volume: 38
+   Number: 8
+   Pages: 879-87
+   DOI: 10.1038/ng1840
+   PMID: 16832355
+   URL: http://www.nature.com/ng/journal/v38/n8/full/ng1840.html
+   eprint: http://www.nature.com/ng/journal/v38/n8/pdf/ng1840.pdf