[med-svn] [snpeff] 04/09: Source is actually at Github, we need to strip several files (probably more); Vcs will be moved to Git

[Andreas Tille]

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tille pushed a commit to branch master
in repository snpeff.

commit eeca57f724a07cdda2ac108974503cef211d88d7
Author: Andreas Tille <tille at debian.org>
Date:   Mon Jun 20 19:48:09 2016 +0000

    Source is actually at Github, we need to strip several files (probably more); Vcs will be moved to Git
---
 debian/changelog |  2 +-
 debian/control   | 15 ++++++++-------
 debian/copyright | 10 ++++++++--
 debian/watch     |  8 ++++++--
 4 files changed, 23 insertions(+), 12 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index afac3aa..f5e7ace 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,4 +1,4 @@
-snpeff (4.3-1) UNRELEASED; urgency=low
+snpeff (4.2+dfsg-1) UNRELEASED; urgency=low
 
   * Initial release (Closes: #<bug>)
 
diff --git a/debian/control b/debian/control
index 68bb755..4bfae91 100644
--- a/debian/control
+++ b/debian/control
@@ -1,18 +1,19 @@
 Source: snpeff
-Section: science
-Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Andreas Tille <tille at debian.org>
+Section: science
+Priority: optional
 Build-Depends: debhelper (>= 9)
-Standards-Version: 3.9.4
+Standards-Version: 3.9.8
+Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/snpeff.git
+Vcs-Git: https://anonscm.debian.org/git/debian-med/snpeff.git
 Homepage: http://snpeff.sourceforge.net/
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/snpeff/trunk/
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/snpeff/trunk/
 
 Package: snpeff
 Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}
-Description: annotation and effect prediction tool for genome sequences
+Depends: ${shlibs:Depends},
+         ${misc:Depends}
+Description: genetic variant annotation and effect prediction toolbox
  SnpEff is a variant annotation and effect prediction tool. It annotates
  and predicts the effects of variants on genes (such as amino acid
  changes). 
diff --git a/debian/copyright b/debian/copyright
index 131c5f0..3976970 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -1,10 +1,16 @@
 Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: snpEff
 Upstream-Contact: Pablo Cingolani <pcingola at users.sourceforge.net>
-Source: https://snpeff.svn.sourceforge.net/svnroot/snpeff/SnpEffect/trunk/
+Source: https://github.com/pcingola/SnpEff/releases
+Files-Excluded: */config/OLD
+                */doc/*.pdf
+                */doc/hgvs
+                *.jar
+                */papers/*.pdf
+                */scripts_build/OLD
 
 Files: *
-Copyright: © 2008-2012, Pablo Cingolani <pcingola at users.sourceforge.net>
+Copyright: © 2008-2016, Pablo Cingolani <pcingola at users.sourceforge.net>
 License: LGPLv3
 
 Files: debian/*
diff --git a/debian/watch b/debian/watch
index 11b90ae..673d10f 100644
--- a/debian/watch
+++ b/debian/watch
@@ -1,4 +1,8 @@
 version=3
 
-opts="uversionmangle=s/_/./g" \
-  http://sf.net/snpeff/snpEff_v(\d[\d_.]+)_core\.(?:tgz|tbz|txz|zip|(?:tar\.(?:gz|bz2|xz)))
+opts="repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,repack,compression=xz" \
+   https://github.com/pcingola/SnpEff/releases .*/archive/v(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz)
+
+# That's the binary jar download
+#opts="uversionmangle=s/_/./g" \
+#  http://sf.net/snpeff/snpEff_v(\d[\d_.]+)_core\.(?:tgz|tbz|txz|zip|(?:tar\.(?:gz|bz2|xz)))

-- 
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