[med-svn] r23506 - in trunk/packages/mach/trunk/debian: . upstream

[Andreas Tille]

Author: tille
Date: 2017-01-04 12:06:13 +0000 (Wed, 04 Jan 2017)
New Revision: 23506

Added:
   trunk/packages/mach/trunk/debian/upstream/
   trunk/packages/mach/trunk/debian/upstream/metadata
Removed:
   trunk/packages/mach/trunk/debian/docs
Modified:
   trunk/packages/mach/trunk/debian/compat
   trunk/packages/mach/trunk/debian/control
   trunk/packages/mach/trunk/debian/watch
Log:
Normalise packaging


Modified: trunk/packages/mach/trunk/debian/compat
===================================================================
--- trunk/packages/mach/trunk/debian/compat	2017-01-04 10:05:39 UTC (rev 23505)
+++ trunk/packages/mach/trunk/debian/compat	2017-01-04 12:06:13 UTC (rev 23506)
@@ -1 +1 @@
-8
+10

Modified: trunk/packages/mach/trunk/debian/control
===================================================================
--- trunk/packages/mach/trunk/debian/control	2017-01-04 10:05:39 UTC (rev 23505)
+++ trunk/packages/mach/trunk/debian/control	2017-01-04 12:06:13 UTC (rev 23506)
@@ -1,16 +1,18 @@
 Source: mach-haplotyper
+Maintainer: Steffen Moeller <moeller at debian.org>
 Section: non-free/science
-Priority: extra
-Maintainer: Steffen Moeller <moeller at debian.org>
-Build-Depends: debhelper (>= 8.0.0), dpkg-dev (>= 1.16.1~)
-Standards-Version: 3.9.4
+XS-Autobuild: no
+Priority: optional
+Build-Depends: debhelper (>= 100),
+Standards-Version: 3.9.8
+Vcs-Browser: http://svn.debian.org/viewvc/debian-med/trunk/packages/mach-haplotyper/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/mach-haplotyper/trunk/
 Homepage: http://www.sph.umich.edu/csg/abecasis/MACH/
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/mach-haplotyper/trunk/
-Vcs-Browser: http://svn.debian.org/viewvc/debian-med/trunk/packages/mach-haplotyper/trunk/
 
 Package: mach-haplotyper
 Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}
+Depends: ${shlibs:Depends},
+         ${misc:Depends}
 Description: Markov Chain based SNP haplotyper
  Recent advancements in chip-based DNA genotyping allow to infer DNA
  variants that are not part of the chip but known to be associated

Deleted: trunk/packages/mach/trunk/debian/docs
===================================================================
Added: trunk/packages/mach/trunk/debian/upstream/metadata
===================================================================
--- trunk/packages/mach/trunk/debian/upstream/metadata	                        (rev 0)
+++ trunk/packages/mach/trunk/debian/upstream/metadata	2017-01-04 12:06:13 UTC (rev 23506)
@@ -0,0 +1,11 @@
+Reference:
+  Author: "Yun Li and Cristen J. Willer and Jun Ding and Paul Scheet and Gonçalo R. Abecasis"
+  Title: "MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes"
+  Journal: Genetic Epidemiology
+  Year: 2010
+  Volume: 34
+  Number: 8
+  Pages: 816-34
+  DOI: 10.1002/gepi.20533
+  PMID: 21058334
+  URL: http://onlinelibrary.wiley.com/doi/10.1002/gepi.20533/abstract

Modified: trunk/packages/mach/trunk/debian/watch
===================================================================
--- trunk/packages/mach/trunk/debian/watch	2017-01-04 10:05:39 UTC (rev 23505)
+++ trunk/packages/mach/trunk/debian/watch	2017-01-04 12:06:13 UTC (rev 23506)
@@ -1,2 +1,2 @@
-version=3
+version=4
 http://www.sph.umich.edu/csg/abecasis/MACH/download/mach\.([0-9.]*)\.source.tgz