[med-svn] [r-bioc-edger] branch master updated (b5e9cd8 -> c6edb7c)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository r-bioc-edger.

      from  b5e9cd8   Seems to really need locfit which is default method in some functions
       new  104c7f6   New upstream version 3.16.5+dfsg
       new  5582419   Merge tag 'upstream/3.16.5+dfsg'
       new  ecc57ab   Another upstream release
       new  cb7efdb   debhelper 10
       new  c6edb7c   d/watch: version=4

The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 DESCRIPTION               |   6 +++---
 R/addPriorCount.R         |   2 ++
 R/cpm.R                   |   2 +-
 R/dispBinTrend.R          |   7 ++++---
 R/estimateGLMCommonDisp.R |   2 +-
 R/geneset-DGEList.R       |  26 +++++++++++++-------------
 R/glmTreat.R              |   3 ++-
 R/plotMDS.DGEList.R       |  11 +++++++----
 R/scaleOffset.R           |  37 +++++++++++++++++++++++++++++++++++++
 build/vignette.rds        | Bin 229 -> 228 bytes
 debian/changelog          |   6 ++++--
 debian/compat             |   2 +-
 debian/control            |   2 +-
 debian/watch              |   2 +-
 inst/doc/edgeR.pdf        | Bin 45765 -> 45765 bytes
 man/camera.DGEList.Rd     |  17 ++++++++++++-----
 man/plotMDS.DGEList.Rd    |   8 ++++----
 man/roast.DGEList.Rd      |  32 ++++++++++++++++++++++++++------
 man/scaleOffset.Rd        |  35 +++++++++++++++++++++++++++++++++++
 src/R_calculate_cpm.cpp   |   3 ++-
 src/add_prior.cpp         |   2 --
 21 files changed, 156 insertions(+), 49 deletions(-)
 create mode 100644 R/scaleOffset.R
 create mode 100644 man/scaleOffset.Rd

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