[med-svn] [r-bioc-edger] 02/05: Merge tag 'upstream/3.16.5+dfsg'

[Andreas Tille]

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tille pushed a commit to branch master
in repository r-bioc-edger.

commit 5582419c6f1f6f4157dba4954ed7a389ba7e0002
Merge: b5e9cd8 104c7f6
Author: Andreas Tille <tille at debian.org>
Date:   Thu Jan 5 15:47:57 2017 +0100

    Merge tag 'upstream/3.16.5+dfsg'
    
    Upstream version 3.16.5+dfsg

 DESCRIPTION               |   6 +++---
 R/addPriorCount.R         |   2 ++
 R/cpm.R                   |   2 +-
 R/dispBinTrend.R          |   7 ++++---
 R/estimateGLMCommonDisp.R |   2 +-
 R/geneset-DGEList.R       |  26 +++++++++++++-------------
 R/glmTreat.R              |   3 ++-
 R/plotMDS.DGEList.R       |  11 +++++++----
 R/scaleOffset.R           |  37 +++++++++++++++++++++++++++++++++++++
 build/vignette.rds        | Bin 229 -> 228 bytes
 inst/doc/edgeR.pdf        | Bin 45765 -> 45765 bytes
 man/camera.DGEList.Rd     |  17 ++++++++++++-----
 man/plotMDS.DGEList.Rd    |   8 ++++----
 man/roast.DGEList.Rd      |  32 ++++++++++++++++++++++++++------
 man/scaleOffset.Rd        |  35 +++++++++++++++++++++++++++++++++++
 src/R_calculate_cpm.cpp   |   3 ++-
 src/add_prior.cpp         |   2 --
 17 files changed, 149 insertions(+), 44 deletions(-)

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