[med-svn] [giira] 04/09: Merge tag 'upstream/0.0.20140625'

[Andreas Tille]

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tille pushed a commit to branch master
in repository giira.

commit 22b22fdd5d7e94647d46edeaee9207f0240f86b1
Merge: 2b25d25 54ea890
Author: Andreas Tille <tille at debian.org>
Date:   Mon Jan 9 11:55:59 2017 +0100

    Merge tag 'upstream/0.0.20140625'
    
    Upstream version 0.0.20140625

 src/geneFinder/ExtractGeneCandidates.java       |   3 +
 src/geneFinder/FrameSearch.java                 | 236 ++++++++++++++++++++++++
 src/geneFinder/GeneFinder.java                  |  10 +-
 src/geneFinder/Giira.java                       |   5 +-
 src/geneFinder/ProkaryoteExtraction.java        |   3 +
 src/geneFinder/Prokaryote_Specials.java         | 211 +++++++++++++++++++++
 src/geneFinder/ReadInParameters_GeneFinder.java |  88 ++++++++-
 src/geneFinder/SamParser.java                   |  76 ++++++--
 src/types/Rna.java                              |   2 +-
 9 files changed, 612 insertions(+), 22 deletions(-)

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