[med-svn] r23550 - in trunk/packages/R/r-bioc-phyloseq/trunk/debian: . patches

[Andreas Tille]

Author: tille
Date: 2017-01-10 08:39:25 +0000 (Tue, 10 Jan 2017)
New Revision: 23550

Added:
   trunk/packages/R/r-bioc-phyloseq/trunk/debian/patches/
   trunk/packages/R/r-bioc-phyloseq/trunk/debian/patches/fix_r-cran-ade4_versioning.patch
   trunk/packages/R/r-bioc-phyloseq/trunk/debian/patches/series
Modified:
   trunk/packages/R/r-bioc-phyloseq/trunk/debian/changelog
Log:
Fix versioned depends from r-cran-ade4


Modified: trunk/packages/R/r-bioc-phyloseq/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-phyloseq/trunk/debian/changelog	2017-01-09 16:20:25 UTC (rev 23549)
+++ trunk/packages/R/r-bioc-phyloseq/trunk/debian/changelog	2017-01-10 08:39:25 UTC (rev 23550)
@@ -1,3 +1,10 @@
+r-bioc-phyloseq (1.19.1-2) unstable; urgency=medium
+
+  * Fix versioned depends from r-cran-ade4
+    Closes: #850767
+
+ -- Andreas Tille <tille at debian.org>  Tue, 10 Jan 2017 09:31:39 +0100
+
 r-bioc-phyloseq (1.19.1-1) unstable; urgency=medium
 
   * New upstream version

Added: trunk/packages/R/r-bioc-phyloseq/trunk/debian/patches/fix_r-cran-ade4_versioning.patch
===================================================================
--- trunk/packages/R/r-bioc-phyloseq/trunk/debian/patches/fix_r-cran-ade4_versioning.patch	                        (rev 0)
+++ trunk/packages/R/r-bioc-phyloseq/trunk/debian/patches/fix_r-cran-ade4_versioning.patch	2017-01-10 08:39:25 UTC (rev 23550)
@@ -0,0 +1,21 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Tue, 10 Jan 2017 08:53:44 +0100
+Description: Phyloseq upstream does not distinguish between '.' and '-' in
+ version specification.  Due to automatic calculation of dependencies via
+ ${R:Depends} the wrongly versioned relation to r-cran-ade4 ends up in the
+ control information of the package.  This patch fixes the relation.
+ .
+ See
+   https://lists.alioth.debian.org/pipermail/debian-med-packaging/2016-November/047737.html
+
+--- a/DESCRIPTION
++++ b/DESCRIPTION
+@@ -10,7 +10,7 @@ Author: Paul J. McMurdie <joey711 at gmail.
+     Susan Holmes <susan at stat.stanford.edu>, with
+     contributions from Gregory Jordan and Scott Chamberlain
+ License: AGPL-3
+-Imports: BiocGenerics (>= 0.18.0), ade4 (>= 1.7.4), ape (>= 3.4),
++Imports: BiocGenerics (>= 0.18.0), ade4 (>= 1.7-4), ape (>= 3.4),
+         biomformat (>= 1.0.0), Biostrings (>= 2.40.0), cluster (>=
+         2.0.4), data.table (>= 1.9.6), foreach (>= 1.4.3), ggplot2 (>=
+         2.1.0), igraph (>= 1.0.1), methods (>= 3.3.0), multtest (>=

Added: trunk/packages/R/r-bioc-phyloseq/trunk/debian/patches/series
===================================================================
--- trunk/packages/R/r-bioc-phyloseq/trunk/debian/patches/series	                        (rev 0)
+++ trunk/packages/R/r-bioc-phyloseq/trunk/debian/patches/series	2017-01-10 08:39:25 UTC (rev 23550)
@@ -0,0 +1 @@
+fix_r-cran-ade4_versioning.patch