[med-svn] [ecopcr] 05/07: spelling

[Andreas Tille]

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tille pushed a commit to tag debian/0.5.0+dfsg-1
in repository ecopcr.

commit e11b8736fa3c8f03d9e61e29be2ea30946c60aef
Author: Andreas Tille <tille at debian.org>
Date:   Wed Jan 11 16:03:19 2017 +0100

    spelling
---
 debian/patches/spelling.patch | 58 ++++++++++++++++++++++++++++++++++++-------
 1 file changed, 49 insertions(+), 9 deletions(-)

diff --git a/debian/patches/spelling.patch b/debian/patches/spelling.patch
index c0fc82b..172350b 100644
--- a/debian/patches/spelling.patch
+++ b/debian/patches/spelling.patch
@@ -15,12 +15,52 @@ Description: Spelling fixes
          PP      "------------------------------------------\n\n");
 --- a/src/ecofind.c
 +++ b/src/ecofind.c
-@@ -337,7 +337,7 @@ int main(int argc, char **argv)
- 		re_error = regcomp (&re_preg, argv[k], REG_NOSUB | REG_EXTENDED | REG_ICASE);
- 		if (re_error)
- 		{
--			fprintf(stderr,"#  misformed pattern '%s'\n",argv[k]);
-+			fprintf(stderr,"#  malformed pattern '%s'\n",argv[k]);
- 			exit(1);
- 		}
- 		
+@@ -175,7 +175,7 @@ static void PrintHelp()
+         PP      "-a : [A]ll enable the search on all alternative names and not only scientific names.\n\n");        
+         PP      "-d : [D]atabase containing the taxonomy.\n");
+         PP		"     To match the expected format, the database\n");
+-        PP		"     has to be formated first by the ecoPCRFormat.py\n");
++        PP		"     has to be formatted first by the ecoPCRFormat.py\n");
+         PP		"     program located in the tools directory.\n");
+         PP		"     Write the database radical without any extension.\n\n");
+         PP      "-h : [H]elp - print <this> help\n\n");
+--- a/src/ecoisundertaxon.c
++++ b/src/ecoisundertaxon.c
+@@ -32,7 +32,7 @@ static void PrintHelp()
+         PP      "       : taxonomic id.\n\n");
+         PP      "------------------------------------------\n");
+         PP      " database : to match the expected format, the database\n");
+-        PP      " has to be formated first by the ecoPCRFormat.py program located.\n");
++        PP      " has to be formatted first by the ecoPCRFormat.py program located.\n");
+         PP      " in the tools directory. Type the radical only, leaving out the extension\n");
+         PP      "------------------------------------------\n\n");
+         PP		" https://www.grenoble.prabi.fr/trac/ecoPCR/wiki");
+@@ -120,4 +120,4 @@ int main(int argc, char **argv){
+ 		printf("# taxid_1 (%d) is NOT son of taxid_2 (%d)\n",taxid_1, taxid_2);
+ 	
+ 	return 0;
+-}
+\ No newline at end of file
++}
+--- a/src/ecopcr.c
++++ b/src/ecopcr.c
+@@ -26,7 +26,7 @@ static void PrintHelp()
+         PP      "-a    : Salt concentration in M for Tm computation (default 0.05 M)\n\n");
+         PP      "-c    : Consider that the database sequences are [c]ircular\n\n");
+         PP      "-d    : [D]atabase : to match the expected format, the database\n");
+-        PP      "        has to be formated first by the ecoPCRFormat.py program located.\n");
++        PP      "        has to be formatted first by the ecoPCRFormat.py program located.\n");
+         PP      "        in the tools directory.\n");
+         PP      "        ecoPCRFormat.py creates three file types :\n");
+         PP      "            .sdx : contains the sequences\n");
+--- a/src/libecoPCR/ecoPCR.h
++++ b/src/libecoPCR/ecoPCR.h
+@@ -210,7 +210,7 @@ econameidx_t     *read_nameidx(const cha
+ 
+ 
+ 	/**
+-	 * Read taxonomy data as formated by the ecoPCRFormat.py script.
++	 * Read taxonomy data as formatted by the ecoPCRFormat.py script.
+ 	 * 
+ 	 * This function is normaly uses internaly by the read_taxonomy
+ 	 * function and should not be called directly.

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