[med-svn] [iva] branch upstream updated (1c5c596 -> 83186eb)

[Sascha Steinbiss]

This is an automated email from the git hooks/post-receive script.

satta pushed a change to branch upstream
in repository iva.

      from  1c5c596   New upstream version 1.0.7+ds
       new  83186eb   New upstream version 1.0.8+ds

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 iva/common.py                                            |  2 +-
 iva/gage/getMummerStats.sh                               |  2 ++
 iva/kraken.py                                            | 16 ++++++++++++++++
 .../NC_123456.embl => kraken_count_cds_from_embl.0}      |  7 -------
 .../NC_123456.embl => kraken_count_cds_from_embl.1}      |  0
 .../NC_123456.embl => kraken_count_cds_from_embl.2}      | 10 ++++++++++
 iva/tests/kraken_test.py                                 |  9 ++++++++-
 scripts/iva_qc_make_db                                   |  2 +-
 setup.py                                                 |  2 +-
 9 files changed, 39 insertions(+), 11 deletions(-)
 copy iva/tests/data/{qc_test.dummy.embl/NC_123456.embl => kraken_count_cds_from_embl.0} (72%)
 copy iva/tests/data/{qc_test.dummy.embl/NC_123456.embl => kraken_count_cds_from_embl.1} (100%)
 copy iva/tests/data/{qc_test.dummy.embl/NC_123456.embl => kraken_count_cds_from_embl.2} (73%)

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/iva.git